Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18672 | Sorghum | nucleus | 80.92 | 80.69 |
| Zm00001d038994_P001 | Maize | cytosol | 78.9 | 79.59 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 76.3 | 74.79 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 76.3 | 74.79 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 76.88 | 74.72 |
| Os01t0674000-01 | Rice | nucleus | 58.09 | 60.54 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 40.46 | 55.56 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 41.33 | 55.0 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 39.02 | 54.66 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 41.91 | 53.7 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 39.31 | 53.33 |
| VIT_10s0003g01300.t01 | Wine grape | nucleus | 39.02 | 44.7 |
| KRH27047 | Soybean | nucleus | 37.86 | 42.67 |
| KRH21272 | Soybean | nucleus | 38.15 | 42.31 |
| Solyc02g076810.2.1 | Tomato | cytosol | 34.1 | 41.99 |
| KRH22283 | Soybean | nucleus | 36.99 | 41.83 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 35.26 | 41.64 |
| PGSC0003DMT400026432 | Potato | cytosol | 34.68 | 41.52 |
| CDX71939 | Canola | nucleus, plastid | 34.97 | 40.2 |
| Bra003346.1-P | Field mustard | nucleus | 35.55 | 40.2 |
| CDX98311 | Canola | nucleus | 36.13 | 40.06 |
| CDX67755 | Canola | nucleus | 36.42 | 39.87 |
| Solyc12g010890.1.1 | Tomato | nucleus | 36.42 | 39.01 |
| KRH11016 | Soybean | nucleus | 27.75 | 38.4 |
| AT3G58630.1 | Thale cress | nucleus | 35.55 | 38.32 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 33.53 | 33.43 |
| PGSC0003DMT400020194 | Potato | plastid | 35.55 | 32.11 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 35.26 | 30.73 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 35.55 | 28.67 |
| Os04t0445600-00 | Rice | nucleus | 31.5 | 26.14 |
| Os02t0565000-01 | Rice | nucleus | 28.03 | 23.15 |
| Os01t0718900-01 | Rice | nucleus | 20.81 | 22.36 |
Protein Annotations
| EMBL:AK067862 | EMBL:AK122091 | EnsemblPlants:Os05t0560600-01 | EnsemblPlantsGene:Os05g0560600 | EntrezGene:4339599 | ncoils:Coil |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF33 | PFAM:PF13837 | ProteinID:AAU10644.1 | ProteinID:BAF18224.1 | ProteinID:BAS95315.1 |
| ProteinID:EEE64675.1 | RefSeq:XP_015639809.1 | SEG:seg | UniParc:UPI000042AB99 | UniProt:Q688Y5 | MapMan:15.5.20 |
Description
Homeodomain-like containing protein. (Os05t0560600-01);Homeodomain-like containing protein. (Os05t0560600-02)
Coordinates
chr5:+:27899055..27902494
Molecular Weight (calculated)
37446.3 Da
IEP (calculated)
10.502
GRAVY (calculated)
-0.642
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVREMAVAA AAAAAASSGG GGGGLRMPPP NPNLPYREDC WSEGETEALV RAWGSRYVEL NRGNLRQKQW QEVADAVNSR RGAAARRRPP RTDVQCKNRV
101: DTLKKKYKAE RARVMPSTWS FFPELDRLVG PTLSASASKR PSPSPSPVPP PPYFAMPIHP SAVRKPPSPS PSPSPPPPMA LPLPSYRRGS PLPAAALIQQ
201: EAAAAAAAAV SDSEDSEGPG DNNNHNAQRS PSQSVSSRSG NSNKRSRQEV DGGFRELARA IEAFAEMYER VESAKQKQAL EIERQRIDFL KQLEVKRMEN
301: FVDAHVKLAR AKRIKKHAGT APDGIGAAEL VSSVAALPFL STSTYI
101: DTLKKKYKAE RARVMPSTWS FFPELDRLVG PTLSASASKR PSPSPSPVPP PPYFAMPIHP SAVRKPPSPS PSPSPPPPMA LPLPSYRRGS PLPAAALIQQ
201: EAAAAAAAAV SDSEDSEGPG DNNNHNAQRS PSQSVSSRSG NSNKRSRQEV DGGFRELARA IEAFAEMYER VESAKQKQAL EIERQRIDFL KQLEVKRMEN
301: FVDAHVKLAR AKRIKKHAGT APDGIGAAEL VSSVAALPFL STSTYI
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.