CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21272	Soybean	nucleus	88.4	70.83
VIT_10s0003g01300.t01	Wine grape	nucleus	59.2	49.01
Solyc02g076810.2.1	Tomato	cytosol	50.8	45.2
PGSC0003DMT400026432	Potato	cytosol	52.0	44.98
KRH27047	Soybean	nucleus	44.8	36.48
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	37.6	36.15
KRH22283	Soybean	nucleus	44.0	35.95
GSMUA_Achr9P06410_001	Banana	nucleus	38.0	35.19
GSMUA_Achr1P11500_001	Banana	nucleus	34.0	34.41
GSMUA_Achr5P09160_001	Banana	nucleus	34.0	33.73
GSMUA_Achr1P27460_001	Banana	nucleus	32.8	32.16
HORVU3Hr1G061870.1	Barley	nucleus	37.6	29.75
TraesCS3A01G271400.1	Wheat	nucleus	37.6	29.56
TraesCS3D01G271000.1	Wheat	nucleus	37.6	29.56
Zm00001d043902_P001	Maize	nucleus	37.2	29.25
Zm00001d011571_P001	Maize	cytosol	36.8	29.21
TraesCS3B01G305100.1	Wheat	nucleus	37.2	29.15
EES03423	Sorghum	cytosol	36.4	28.71
Zm00001d030350_P001	Maize	nucleus	23.6	28.1
Os05t0560600-01	Rice	nucleus	38.4	27.75
Os01t0674000-01	Rice	nucleus	36.4	27.41
EES18672	Sorghum	nucleus	37.2	26.8
Zm00001d038994_P001	Maize	cytosol	36.4	26.53
TraesCS1D01G400500.1	Wheat	nucleus	36.0	25.5
TraesCS1B01G420500.1	Wheat	nucleus	36.0	25.28
TraesCS1A01G392300.1	Wheat	nucleus	35.6	25.21
KRH47662	Soybean	nucleus, plastid	31.6	21.47
KRH06239	Soybean	nucleus	30.8	20.81
KRH48419	Soybean	nucleus	18.8	13.06
KRH09846	Soybean	nucleus	20.0	12.59
KRH23479	Soybean	nucleus	19.2	12.5
KRH39263	Soybean	nucleus	18.4	11.59

Protein Annotations

EMBL:ACUP02009170	EMBL:ACUP02009171	EnsemblPlants:KRH11016	EnsemblPlantsGene:GLYMA_15G082900	ncoils:Coil	PANTHER:PTHR31307
PANTHER:PTHR31307:SF16	PFAM:PF13837	ProteinID:KRH11016	ProteinID:KRH11016.1	SEG:seg	UniParc:UPI0006EE00FD
UniProt:A0A0R0G6P9	MapMan:15.5.20	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:6333075..6334762

Molecular Weight (calculated)

27695.9 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.808

Length

250 amino acids

Sequence
(BLAST)

001: MPDFHDSLST TPPPQPSRPV PVREDCWSEE ASATLVDAWG RRYLELNRGN LRQKDWQDVA DAVNALHGHT KKTHRTDVQC KNRIDTIKKK YKIEKARVSA
101: SNGTLSSSWP FYERLDALIG PNFSAKKSTS PPSPSPPVAL PLLPHRKNQN QNPSSSPAIS VPPTAVALPQ KRSAAAAMDE GYFRRNYSAV AAAAAAAEAD
201: EEEDEDEAED LEEEEECEEE GRGSEDEWVA RGFFSEFLFG GKRKIDCLGL

Best Arabidopsis Sequence Match ( AT3G58630.1 )
(BLAST)

001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.