Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P06410_001 | Banana | nucleus | 85.77 | 82.59 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 71.15 | 74.9 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 68.46 | 70.63 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 65.77 | 67.06 |
| VIT_10s0003g01300.t01 | Wine grape | nucleus | 58.46 | 50.33 |
| Solyc02g076810.2.1 | Tomato | cytosol | 52.69 | 48.75 |
| PGSC0003DMT400026432 | Potato | cytosol | 53.08 | 47.75 |
| KRH27047 | Soybean | nucleus | 55.38 | 46.91 |
| KRH22283 | Soybean | nucleus | 54.23 | 46.08 |
| KRH21272 | Soybean | nucleus | 55.0 | 45.83 |
| Solyc12g010890.1.1 | Tomato | nucleus | 53.85 | 43.34 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 53.08 | 43.26 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 44.23 | 43.23 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 52.69 | 43.08 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 52.69 | 43.08 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 51.92 | 42.72 |
| EES03423 | Sorghum | cytosol | 50.77 | 41.64 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 46.92 | 41.64 |
| Zm00001d043902_P001 | Maize | nucleus | 50.77 | 41.51 |
| Bra003346.1-P | Field mustard | nucleus | 48.85 | 41.5 |
| Os05t0560600-01 | Rice | nucleus | 55.0 | 41.33 |
| Zm00001d011571_P001 | Maize | cytosol | 50.0 | 41.27 |
| CDX71939 | Canola | nucleus, plastid | 47.31 | 40.86 |
| AT3G58630.1 | Thale cress | nucleus | 50.38 | 40.81 |
| CDX98311 | Canola | nucleus | 48.85 | 40.71 |
| EES18672 | Sorghum | nucleus | 53.85 | 40.35 |
| Zm00001d038994_P001 | Maize | cytosol | 53.08 | 40.23 |
| CDX67755 | Canola | nucleus | 48.85 | 40.19 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 53.46 | 40.06 |
| Os01t0674000-01 | Rice | nucleus | 50.77 | 39.76 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 53.85 | 39.66 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 53.46 | 39.38 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 53.85 | 39.33 |
| KRH11016 | Soybean | nucleus | 36.15 | 37.6 |
| PGSC0003DMT400020194 | Potato | plastid | 53.46 | 36.29 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 41.92 | 31.96 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 44.23 | 31.77 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 48.08 | 31.49 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 48.85 | 29.6 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 42.69 | 27.48 |
| GSMUA_Achr8P26150_001 | Banana | nucleus | 23.08 | 17.14 |
| GSMUA_Achr8P04010_001 | Banana | nucleus | 21.15 | 15.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P26840_001 | EnsemblPlants:GSMUA_Achr6T26840_001 | EnsemblPlantsGene:GSMUA_Achr6G26840_001 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF2 |
| PFAM:PF13837 | SEG:seg | UniParc:UPI000295E8A5 | UniProt:M0TAH9 | MapMan:15.5.20 | : |
Description
transcription factor like protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G26840_001]
Coordinates
chr6:+:27472500..27477407
Molecular Weight (calculated)
29142.5 Da
IEP (calculated)
9.762
GRAVY (calculated)
-0.832
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRETPPTR PPNPALPYRE DCWSEGETST LVDAWGDRYL ELKRGNLRQK HWQEVADAVN CRRGAFGRRP PRTDVQCKNR IDTLKKKYKI EKARVTSAFA
101: SQWQFFSRLD ALIGSAAAPP AKKPSPSPPL ARRGAAISIS VDDSIFQRAA AAAAAAGDDN DEEDDLESPS GSSSRSGGGL RMARGKEGDG IRELAKAIER
201: FAEIYERVEG AKQRQMMEME KKRMEFAKEL EFQRMQIFVD SQVQLAKIKR AKRSDADGYM
101: SQWQFFSRLD ALIGSAAAPP AKKPSPSPPL ARRGAAISIS VDDSIFQRAA AAAAAAGDDN DEEDDLESPS GSSSRSGGGL RMARGKEGDG IRELAKAIER
201: FAEIYERVEG AKQRQMMEME KKRMEFAKEL EFQRMQIFVD SQVQLAKIKR AKRSDADGYM
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Arabidopsis Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.