Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 92.44 | 85.55 |
| PGSC0003DMT400020194 | Potato | plastid | 61.21 | 63.45 |
| KRH22283 | Soybean | nucleus | 39.29 | 50.98 |
| KRH27047 | Soybean | nucleus | 39.29 | 50.81 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 29.97 | 48.18 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 31.49 | 48.08 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 32.49 | 47.78 |
| PGSC0003DMT400026432 | Potato | cytosol | 34.51 | 47.4 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 29.97 | 47.22 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 29.47 | 45.88 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 33.5 | 45.39 |
| CDX71939 | Canola | nucleus, plastid | 33.5 | 44.19 |
| Bra003346.1-P | Field mustard | nucleus | 33.25 | 43.14 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 37.03 | 42.36 |
| CDX98311 | Canola | nucleus | 33.25 | 42.31 |
| CDX67755 | Canola | nucleus | 33.25 | 41.77 |
| AT3G58630.1 | Thale cress | nucleus | 33.0 | 40.81 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 29.97 | 37.66 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 29.97 | 37.3 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 29.72 | 37.11 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 29.72 | 37.11 |
| PGSC0003DMT400077199 | Potato | cytosol | 25.44 | 37.0 |
| Zm00001d011571_P001 | Maize | cytosol | 28.72 | 36.19 |
| EES03423 | Sorghum | cytosol | 28.72 | 35.96 |
| Zm00001d043902_P001 | Maize | nucleus | 28.46 | 35.53 |
| Os05t0560600-01 | Rice | nucleus | 30.73 | 35.26 |
| Os01t0674000-01 | Rice | nucleus | 28.21 | 33.73 |
| EES18672 | Sorghum | nucleus | 28.97 | 33.14 |
| Zm00001d038994_P001 | Maize | cytosol | 28.46 | 32.94 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 28.46 | 32.01 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 28.21 | 31.73 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 27.96 | 31.18 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 27.71 | 29.49 |
| Zm00001d030350_P001 | Maize | nucleus | 14.86 | 28.1 |
| PGSC0003DMT400080593 | Potato | nucleus | 21.16 | 22.46 |
| PGSC0003DMT400070593 | Potato | nucleus | 18.39 | 20.74 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400052607 | EnsemblPlantsGene:PGSC0003DMG400020421 | EntrezGene:102601154 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF2 |
| PFAM:PF13837 | PGSC:PGSC0003DMG400020421 | RefSeq:XP_006348872.1 | SEG:seg | UniParc:UPI000294E45C | UniProt:M1BTN6 |
| MapMan:15.5.20 | : | : | : | : | : |
Description
6b-interacting protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020421]
Coordinates
chr7:-:50240702..50243686
Molecular Weight (calculated)
44405.9 Da
IEP (calculated)
10.362
GRAVY (calculated)
-0.697
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRRHNHTDN PSPITDSNPN SSTIFHSSAA DVSHSGTMSD DDHLAPPFSN NNSPSPSHSR SPPPCRDNKL LALPPPPMVT PASVSARTPV FPAREDCWSE
101: AATHTLIEAW GSRYVELNRG NLRHQHWEEV ADAVNTVHGH TKKLYRTDIQ CKNRIDTLKK KYKIERAKVS QSPGRYISTW PFFSSLNVLI GVTAKVSPPP
201: AAAILPPQRR MPPTQATSPL QWRAPPPETS PLQWRSPPPE MPPFQWRTPP VPPPPLLGIP VGLRSKRPAA AMDYTVSRRN FSAMAAAAAA ASDDSYEEKE
301: ESETSSVAAS AMAIAACRSK RKKSGGLVEG YKMLAESIGK FSEIYERVEK AKQRQMIELE KQRMQFAKDL EIQRMKLIME SQVHLEKLKR SKPQFRR
101: AATHTLIEAW GSRYVELNRG NLRHQHWEEV ADAVNTVHGH TKKLYRTDIQ CKNRIDTLKK KYKIERAKVS QSPGRYISTW PFFSSLNVLI GVTAKVSPPP
201: AAAILPPQRR MPPTQATSPL QWRAPPPETS PLQWRSPPPE MPPFQWRTPP VPPPPLLGIP VGLRSKRPAA AMDYTVSRRN FSAMAAAAAA ASDDSYEEKE
301: ESETSSVAAS AMAIAACRSK RKKSGGLVEG YKMLAESIGK FSEIYERVEK AKQRQMIELE KQRMQFAKDL EIQRMKLIME SQVHLEKLKR SKPQFRR
001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
Arabidopsis Description
ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.