Factsheet for PGSC0003DMT400020194

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010890.1.1	Tomato	nucleus	79.63	94.43
PGSC0003DMT400052607	Potato	nucleus, plastid	63.45	61.21
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	36.29	53.46
KRH27047	Soybean	nucleus	42.56	53.09
KRH22283	Soybean	nucleus	42.3	52.94
GSMUA_Achr9P06410_001	Banana	nucleus	35.77	50.74
GSMUA_Achr1P11500_001	Banana	nucleus	32.38	50.2
GSMUA_Achr5P09160_001	Banana	nucleus	32.64	49.6
PGSC0003DMT400026432	Potato	cytosol	36.81	48.79
GSMUA_Achr1P27460_001	Banana	nucleus	32.11	48.24
Bra007407.1-P	Field mustard	nucleus, plastid	35.25	46.08
VIT_12s0028g02150.t01	Wine grape	cytosol	40.99	45.24
CDX71939	Canola	nucleus, plastid	35.51	45.18
Bra003346.1-P	Field mustard	nucleus	35.51	44.44
AT3G58630.1	Thale cress	nucleus	36.81	43.93
CDX98311	Canola	nucleus	35.51	43.59
CDX67755	Canola	nucleus	35.77	43.35
PGSC0003DMT400077199	Potato	cytosol	28.2	39.56
TraesCS3B01G305100.1	Wheat	nucleus	31.33	37.62
TraesCS3D01G271000.1	Wheat	nucleus	31.07	37.42
TraesCS3A01G271400.1	Wheat	nucleus	31.07	37.42
HORVU3Hr1G061870.1	Barley	nucleus	30.81	37.34
EES03423	Sorghum	cytosol	30.03	36.28
Zm00001d011571_P001	Maize	cytosol	29.77	36.19
Zm00001d043902_P001	Maize	nucleus	30.03	36.16
Os05t0560600-01	Rice	nucleus	32.11	35.55
EES18672	Sorghum	nucleus	31.33	34.58
Zm00001d038994_P001	Maize	cytosol	30.81	34.4
Os01t0674000-01	Rice	nucleus	29.77	34.34
TraesCS1A01G392300.1	Wheat	nucleus	30.55	33.14
TraesCS1D01G400500.1	Wheat	nucleus	30.29	32.86
TraesCS1B01G420500.1	Wheat	nucleus	30.29	32.58
Zm00001d030350_P001	Maize	nucleus	15.67	28.57
PGSC0003DMT400088401	Potato	nucleus, plastid	27.68	28.42
PGSC0003DMT400080593	Potato	nucleus	20.89	21.39
PGSC0003DMT400070593	Potato	nucleus	18.54	20.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400020194	EnsemblPlantsGene:PGSC0003DMG400007806	EntrezGene:102599601	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF2
PFAM:PF13837	PGSC:PGSC0003DMG400007806	SEG:seg	UniParc:UPI000294C385	UniProt:M1AD25	MapMan:15.5.20

Description

6b-interacting protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007806]

Coordinates

chr12:+:1497784..1500543

Molecular Weight (calculated)

42531.9 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.740

Length

383 amino acids

Sequence
(BLAST)

001: MYRRPNHTDY FSPSSLFSSS NPNSSTAVQQ SNSAVAASPS SPMSDDDLVA SPSSNNNSPS PSPSPPPYSV KNELATLPPP PMIPPASTRP AAFPAREDCW
101: SEAATHTLIE AWGSHYVELK RGNLRQKHWQ EVANAVNALH GHSKKQFRTD IQCKNRIDTL KKKYKIEKAR VSQSHSRYIP QWPFFNSLDV LIGDNFKPSP
201: LPVTVAPRRK TPPLLPPPPS AVPVGPRSKR PAAVMEDAVS RRNFSAMAAA AAAAASEDSD EEEESETSSP ATFTAGALSR RKESGALAEG CSRLAEAIGK
301: FAEIYERVED AKQRQMVELE KQRMQFAKDL EIQRMKLIME SQVQLEKLKR AKNSSQAETL DEVDNHKEHI YDQEWRMGAS HWM

Best Arabidopsis Sequence Match ( AT3G58630.1 )
(BLAST)

001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.