Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G061870.1 | Barley | nucleus | 78.61 | 82.59 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 78.61 | 82.08 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 78.31 | 81.76 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 78.31 | 81.5 |
| EES03423 | Sorghum | cytosol | 74.4 | 77.92 |
| Zm00001d011571_P001 | Maize | cytosol | 73.19 | 77.14 |
| Zm00001d043902_P001 | Maize | nucleus | 73.19 | 76.42 |
| Os05t0560600-01 | Rice | nucleus | 60.54 | 58.09 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 38.86 | 51.19 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 39.76 | 50.77 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 36.75 | 49.39 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 40.06 | 49.26 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 37.35 | 48.63 |
| VIT_10s0003g01300.t01 | Wine grape | nucleus | 37.65 | 41.39 |
| KRH27047 | Soybean | nucleus | 37.05 | 40.07 |
| Solyc02g076810.2.1 | Tomato | cytosol | 33.13 | 39.15 |
| KRH21272 | Soybean | nucleus | 36.75 | 39.1 |
| KRH22283 | Soybean | nucleus | 35.84 | 38.89 |
| PGSC0003DMT400026432 | Potato | cytosol | 32.53 | 37.37 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 32.53 | 36.86 |
| CDX98311 | Canola | nucleus | 34.34 | 36.54 |
| KRH11016 | Soybean | nucleus | 27.41 | 36.4 |
| CDX71939 | Canola | nucleus, plastid | 32.83 | 36.21 |
| CDX67755 | Canola | nucleus | 34.34 | 36.08 |
| Bra003346.1-P | Field mustard | nucleus | 33.13 | 35.95 |
| Solyc12g010890.1.1 | Tomato | nucleus | 34.34 | 35.29 |
| AT3G58630.1 | Thale cress | nucleus | 33.73 | 34.89 |
| PGSC0003DMT400020194 | Potato | plastid | 34.34 | 29.77 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 31.02 | 29.68 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 33.73 | 28.21 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 33.43 | 25.87 |
| Os04t0445600-00 | Rice | nucleus | 31.63 | 25.18 |
| Os02t0565000-01 | Rice | nucleus | 29.82 | 23.63 |
| Os01t0718900-01 | Rice | nucleus | 18.98 | 19.57 |
Protein Annotations
| EMBL:AK099396 | EnsemblPlants:Os01t0674000-01 | EnsemblPlantsGene:Os01g0674000 | EntrezGene:4325908 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF34 |
| PFAM:PF13837 | ProteinID:BAC01183.1 | ProteinID:BAF05751.1 | ProteinID:BAS73638.1 | ProteinID:EAZ13059.1 | RefSeq:XP_015614545.1 |
| SEG:seg | UniParc:UPI00000A2598 | UniProt:Q8LJG7 | MapMan:15.5.20 | : | : |
Description
Homeodomain-like containing protein. (Os01t0674000-01)
Coordinates
chr1:-:27690597..27691968
Molecular Weight (calculated)
35921.3 Da
IEP (calculated)
10.097
GRAVY (calculated)
-0.764
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGKPPPPNP NLPYREDCWS DGETAALVDA WGRRYVDLNR GSLRQPQWRE VAEAVNARPG ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWYFY
101: RDLDMLVGPT LSAAAAAGGG GSAKKPSPPR GLPMMRRRLE SPSRSPSPPS PTPAVALPLP NYRQASNLPS AGLLFNKMAA AAAAESDSED GYNNPNNNYE
201: DDEDDGSQQS ASRSVSSRSG GVAAAGAGGG GVSSSKRKRG GGGGGGFGEL ARAVETFAEM YERMEFAKQR HAEEMERQRI KFLKDLELKR MQAFVDVQLQ
301: LAKAKHGKHP DGATEMLMSL AALPFLSTPA YL
101: RDLDMLVGPT LSAAAAAGGG GSAKKPSPPR GLPMMRRRLE SPSRSPSPPS PTPAVALPLP NYRQASNLPS AGLLFNKMAA AAAAESDSED GYNNPNNNYE
201: DDEDDGSQQS ASRSVSSRSG GVAAAGAGGG GVSSSKRKRG GGGGGGFGEL ARAVETFAEM YERMEFAKQR HAEEMERQRI KFLKDLELKR MQAFVDVQLQ
301: LAKAKHGKHP DGATEMLMSL AALPFLSTPA YL
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.