Factsheet for HORVU3Hr1G061870.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G305100.1	Wheat	nucleus	97.78	96.87
TraesCS3A01G271400.1	Wheat	nucleus	97.15	96.54
TraesCS3D01G271000.1	Wheat	nucleus	96.84	96.23
EES03423	Sorghum	cytosol	82.28	82.02
Zm00001d011571_P001	Maize	cytosol	81.33	81.59
Zm00001d043902_P001	Maize	nucleus	81.65	81.13
Os01t0674000-01	Rice	nucleus	82.59	78.61
GSMUA_Achr5P09160_001	Banana	nucleus	41.77	52.38
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	42.72	51.92
GSMUA_Achr1P11500_001	Banana	nucleus	39.87	51.01
GSMUA_Achr9P06410_001	Banana	nucleus	42.72	50.0
GSMUA_Achr1P27460_001	Banana	nucleus	39.56	49.02
VIT_10s0003g01300.t01	Wine grape	nucleus	40.19	42.05
KRH27047	Soybean	nucleus	40.19	41.37
Solyc02g076810.2.1	Tomato	cytosol	36.39	40.93
PGSC0003DMT400026432	Potato	cytosol	37.03	40.48
KRH21272	Soybean	nucleus	39.87	40.38
KRH22283	Soybean	nucleus	38.92	40.2
Bra007407.1-P	Field mustard	nucleus, plastid	36.08	38.91
CDX71939	Canola	nucleus, plastid	36.39	38.21
CDX98311	Canola	nucleus	37.66	38.14
KRH11016	Soybean	nucleus	29.75	37.6
Bra003346.1-P	Field mustard	nucleus	36.39	37.58
CDX67755	Canola	nucleus	37.34	37.34
Solyc12g010890.1.1	Tomato	nucleus	37.66	36.84
AT3G58630.1	Thale cress	nucleus	36.39	35.83
VIT_12s0028g02150.t01	Wine grape	cytosol	34.49	31.41
PGSC0003DMT400020194	Potato	plastid	37.34	30.81
PGSC0003DMT400052607	Potato	nucleus, plastid	37.66	29.97
Solyc07g055100.2.1	Tomato	nucleus, plastid	37.03	27.27
HORVU6Hr1G050140.1	Barley	nucleus, plastid	31.33	23.68
HORVU2Hr1G077940.1	Barley	cytosol, nucleus, plastid	12.34	17.41

Protein Annotations

EMBL:AK363595	EnsemblPlants:HORVU3Hr1G061870.1	EnsemblPlantsGene:HORVU3Hr1G061870	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF33
PFAM:PF13837	SEG:seg	UniParc:UPI0002006473	UniProt:F2DI77	MapMan:15.5.20	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DI77]

Coordinates

chrchr3H:-:471406824..471409761

Molecular Weight (calculated)

34556.0 Da

IEP (calculated)

10.351

GRAVY (calculated)

-0.756

Length

316 amino acids

Sequence
(BLAST)

001: MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYIDLNR GSLRQPQWRE VADAVNTRPG ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWPFF
101: RQLDVLVGPT LSAAAAAKKP SPPRALPMLR RRMSPSRSPS PPSPAPPMAL PLPNYRRGSN LPAADLFHKA AAAAAAADSD SEDGYNNNIN YDDDEGSQQS
201: ASRSVSSHSG GNGPPALGGG GSNKRKRGGA GGFGELAMAM ETFADMYERM EAAKQRHAEE MEKQRIKFLK DLELKRMQAF VDMQLQLSRV KHAKNGTSEM
301: LMSLAALPFL SNPAYL

Best Arabidopsis Sequence Match ( AT3G58630.1 )
(BLAST)

001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.