Factsheet for Solyc07g055100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052607	Potato	nucleus, plastid	85.55	92.44
Solyc12g010890.1.1	Tomato	nucleus	51.52	68.42
KRH22283	Soybean	nucleus	36.36	50.98
KRH27047	Soybean	nucleus	36.36	50.81
GSMUA_Achr9P06410_001	Banana	nucleus	30.77	48.89
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	29.6	48.85
GSMUA_Achr1P11500_001	Banana	nucleus	27.97	48.58
Solyc02g076810.2.1	Tomato	cytosol	30.77	46.98
GSMUA_Achr5P09160_001	Banana	nucleus	27.51	46.83
GSMUA_Achr1P27460_001	Banana	nucleus	27.27	45.88
Bra007407.1-P	Field mustard	nucleus, plastid	30.77	45.05
VIT_12s0028g02150.t01	Wine grape	cytosol	35.9	44.38
CDX71939	Canola	nucleus, plastid	30.77	43.85
Bra003346.1-P	Field mustard	nucleus	30.77	43.14
CDX98311	Canola	nucleus	31.24	42.95
CDX67755	Canola	nucleus	31.24	42.41
AT3G58630.1	Thale cress	nucleus	30.54	40.81
Solyc06g051120.2.1	Tomato	nucleus	23.78	39.84
Zm00001d011571_P001	Maize	cytosol	27.27	37.14
HORVU3Hr1G061870.1	Barley	nucleus	27.27	37.03
TraesCS3B01G305100.1	Wheat	nucleus	27.27	36.68
EES03423	Sorghum	cytosol	27.04	36.59
TraesCS3D01G271000.1	Wheat	nucleus	27.04	36.48
TraesCS3A01G271400.1	Wheat	nucleus	27.04	36.48
Zm00001d043902_P001	Maize	nucleus	26.81	36.16
Os05t0560600-01	Rice	nucleus	28.67	35.55
Os01t0674000-01	Rice	nucleus	25.87	33.43
EES18672	Sorghum	nucleus	26.57	32.85
Zm00001d038994_P001	Maize	cytosol	26.11	32.65
TraesCS1D01G400500.1	Wheat	nucleus	26.11	31.73
TraesCS1A01G392300.1	Wheat	nucleus	26.11	31.73
TraesCS1B01G420500.1	Wheat	nucleus	25.64	30.9
Solyc03g122030.1.1	Tomato	nucleus	25.87	30.58
Zm00001d030350_P001	Maize	nucleus	14.22	29.05
Solyc12g043090.1.1	Tomato	nucleus	19.81	22.67
Solyc05g018350.2.1	Tomato	nucleus	17.72	21.53

Protein Annotations

EnsemblPlants:Solyc07g055100.2.1	EnsemblPlantsGene:Solyc07g055100.2	PANTHER:PTHR31307	PANTHER:PTHR31307:SF2	PFAM:PF13837	SEG:seg
UniParc:UPI000276C81A	UniProt:K4CG49	MapMan:15.5.20	:	:	:

Description

No Description!

Coordinates

chr7:-:63237269..63239778

Molecular Weight (calculated)

48039.8 Da

IEP (calculated)

10.309

GRAVY (calculated)

-0.563

Length

429 amino acids

Sequence
(BLAST)

001: MFRRHNHTDN PSLITSSNPN SSTIFHPSAA DAAVVSHSGT MSDDDHLAPP FSNHNSPSPS HSRSPLPGRD NKLLALPPPP MLTPASMSAR TPVFPAREDC
101: WSEAATHTLI EAWGSRYLEL NRGNLRHQHW EEVADAVNAQ HGHIKKQYRT DIQCKNRIDT LKKKYKIERA KVSQSPGRYI SAWPFFSSLN VLIGVTAKAS
201: PPPPATTLPP QRRMPPTQAT SPPQWRAPPP EMSPLQWRSP PPEMLPFQWR TPPVPPPPLL GIPVGPRSKR PAAAIDYKVS RRNFSAMAAA AAAASDDSDE
301: EKEESETSSV AASAMAIATC RIKRKKSGGL VEGYKMLAES IGKFSEIYER VEMAKQRQMI ELEKQRMQFA KDLEIQRMKL IMESQVHLEK LKRSKTQLRR
401: WFGGMLCNLM RGSLCKPYTC IYILISVFI

Best Arabidopsis Sequence Match ( AT3G58630.2 )
(BLAST)

001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.