Factsheet for TraesCS1D01G400500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G392300.1	Wheat	nucleus	98.3	98.3
TraesCS1B01G420500.1	Wheat	nucleus	96.32	95.51
Os05t0560600-01	Rice	nucleus	74.79	76.3
EES18672	Sorghum	nucleus	73.65	74.93
Zm00001d038994_P001	Maize	cytosol	71.39	73.47
TraesCS3D01G271000.1	Wheat	nucleus	61.47	68.24
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	39.66	53.85
GSMUA_Achr5P09160_001	Banana	nucleus	37.96	53.17
GSMUA_Achr9P06410_001	Banana	nucleus	40.23	52.59
GSMUA_Achr1P11500_001	Banana	nucleus	36.26	51.82
GSMUA_Achr1P27460_001	Banana	nucleus	36.83	50.98
VIT_10s0003g01300.t01	Wine grape	nucleus	35.98	42.05
Solyc02g076810.2.1	Tomato	cytosol	33.14	41.64
Bra007407.1-P	Field mustard	nucleus, plastid	33.99	40.96
KRH21272	Soybean	nucleus	35.69	40.38
PGSC0003DMT400026432	Potato	cytosol	32.86	40.14
KRH27047	Soybean	nucleus	34.84	40.07
Bra003346.1-P	Field mustard	nucleus	34.28	39.54
KRH22283	Soybean	nucleus	33.99	39.22
CDX71939	Canola	nucleus, plastid	33.43	39.2
CDX98311	Canola	nucleus	34.56	39.1
CDX67755	Canola	nucleus	34.84	38.92
AT3G58630.1	Thale cress	nucleus	33.43	36.76
Solyc12g010890.1.1	Tomato	nucleus	33.14	36.22
KRH11016	Soybean	nucleus	25.5	36.0
VIT_12s0028g02150.t01	Wine grape	cytosol	32.58	33.14
PGSC0003DMT400020194	Potato	plastid	32.86	30.29
PGSC0003DMT400052607	Potato	nucleus, plastid	32.01	28.46
Solyc07g055100.2.1	Tomato	nucleus, plastid	31.73	26.11
TraesCS2D01G311800.1	Wheat	nucleus, plastid	29.75	25.42
TraesCS6D01G184500.2	Wheat	nucleus	28.9	24.52
TraesCS3D01G246100.1	Wheat	nucleus, plastid	18.13	20.25

Protein Annotations

EnsemblPlants:TraesCS1D01G400500.1	EnsemblPlantsGene:TraesCS1D01G400500	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF33	PFAM:PF13837
SEG:seg	MapMan:15.5.20	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:467002275..467003336

Molecular Weight (calculated)

37220.7 Da

IEP (calculated)

10.803

GRAVY (calculated)

-0.656

Length

353 amino acids

Sequence
(BLAST)

001: MELREMAAAA AAAASAGGGG GGGGGGGGGG GRLPPPNPNL PYREDCWSEG ETAALVGAWG SRYVDLNRGN LRQKQWQEVA GAVNSRRGAA ARRRPPRTDV
101: QCKNRVDTLK KKYKAERARG GPSAWNFYGE LDRLVGPTLS AAAATKKHPS SGLPAPHFAL PLHPSAARRH PSPSSSPSPP PPMALPLPNY RRGAPLPAAA
201: FIQQAAAAAA AISDSDDSGD LGDNNSNNSR RSPSRSISSH SGGNNKRRRR SESSSGGDGG VGELARAIEA FAEMYERVES AKQKQFLEME RERINFMKQL
301: EVKRMENFVD AHVKLARMKH AKKNGGSAAN GTIGVELASS VAALPFLSNP AYL

Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)

001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN

Arabidopsis Description

ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.