Factsheet for PGSC0003DMT400026432

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g076810.2.1	Tomato	cytosol	91.7	94.31
KRH21272	Soybean	nucleus	65.4	60.58
VIT_10s0003g01300.t01	Wine grape	nucleus	62.98	60.26
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	47.75	53.08
GSMUA_Achr1P11500_001	Banana	nucleus	45.33	53.04
KRH11016	Soybean	nucleus	44.98	52.0
GSMUA_Achr9P06410_001	Banana	nucleus	47.75	51.11
GSMUA_Achr5P09160_001	Banana	nucleus	43.94	50.4
GSMUA_Achr1P27460_001	Banana	nucleus	39.79	45.1
PGSC0003DMT400077199	Potato	cytosol	38.41	40.66
HORVU3Hr1G061870.1	Barley	nucleus	40.48	37.03
PGSC0003DMT400020194	Potato	plastid	48.79	36.81
TraesCS3B01G305100.1	Wheat	nucleus	40.14	36.36
TraesCS3D01G271000.1	Wheat	nucleus	39.79	36.16
TraesCS3A01G271400.1	Wheat	nucleus	39.79	36.16
EES03423	Sorghum	cytosol	39.45	35.96
Zm00001d011571_P001	Maize	cytosol	38.41	35.24
Zm00001d043902_P001	Maize	nucleus	38.75	35.22
Os05t0560600-01	Rice	nucleus	41.52	34.68
EES18672	Sorghum	nucleus	41.52	34.58
PGSC0003DMT400052607	Potato	nucleus, plastid	47.4	34.51
Zm00001d038994_P001	Maize	cytosol	40.83	34.4
TraesCS1D01G400500.1	Wheat	nucleus	40.14	32.86
TraesCS1A01G392300.1	Wheat	nucleus	39.79	32.58
Os01t0674000-01	Rice	nucleus	37.37	32.53
TraesCS1B01G420500.1	Wheat	nucleus	39.45	32.02
Zm00001d030350_P001	Maize	nucleus	23.18	31.9
PGSC0003DMT400088401	Potato	nucleus, plastid	35.99	27.88
PGSC0003DMT400070593	Potato	nucleus	27.34	22.44
PGSC0003DMT400080593	Potato	nucleus	25.95	20.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400026432	EnsemblPlantsGene:PGSC0003DMG400010197	EntrezGene:102590724	PANTHER:PTHR31307	PANTHER:PTHR31307:SF16	PFAM:PF13837
PGSC:PGSC0003DMG400010197	SEG:seg	UniParc:UPI000295A2E7	UniProt:M1AN54	MapMan:15.5.20	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400010197]

Coordinates

chr2:+:32147634..32149064

Molecular Weight (calculated)

33363.6 Da

IEP (calculated)

5.907

GRAVY (calculated)

-0.776

Length

289 amino acids

Sequence
(BLAST)

001: MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQQVSDS VNVLHGHSKK SRRTDVQCKN RIDTLKKKYK VEKAKIIESN
101: GTLTSSWPFF ERLDVLIGNS DKKVTPVMVS PLPLPMSSPP MGVPLPYRRS AMVTPVSLPQ KRQLPAFDES CFRRNYSAVA AAAAAGGGEE DYDDEEEEED
201: VEMTEESWEE DGMRRLAKAI ERFGDIYERV EGMKQRQMVE LEKQRMQFAK DLEVQRMQLF MDTQVQLEKI KHTKRSGSDG IKFTPFDFS

Best Arabidopsis Sequence Match ( AT3G58630.2 )
(BLAST)

001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.