Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P11500_001 | Banana | nucleus | 78.57 | 80.16 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 80.56 | 79.61 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 70.63 | 68.46 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 72.22 | 67.41 |
| Solyc02g076810.2.1 | Tomato | cytosol | 50.79 | 45.55 |
| VIT_10s0003g01300.t01 | Wine grape | nucleus | 52.78 | 44.04 |
| PGSC0003DMT400026432 | Potato | cytosol | 50.4 | 43.94 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 45.24 | 42.86 |
| KRH21272 | Soybean | nucleus | 51.98 | 41.99 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 52.38 | 41.77 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 52.78 | 41.69 |
| EES03423 | Sorghum | cytosol | 52.38 | 41.64 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 52.38 | 41.51 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 52.38 | 41.51 |
| KRH27047 | Soybean | nucleus | 50.4 | 41.37 |
| Zm00001d043902_P001 | Maize | nucleus | 51.98 | 41.2 |
| Zm00001d011571_P001 | Maize | cytosol | 51.19 | 40.95 |
| KRH22283 | Soybean | nucleus | 49.6 | 40.85 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 47.22 | 40.61 |
| Os05t0560600-01 | Rice | nucleus | 55.56 | 40.46 |
| CDX71939 | Canola | nucleus, plastid | 47.22 | 39.53 |
| Zm00001d038994_P001 | Maize | cytosol | 53.17 | 39.07 |
| EES18672 | Sorghum | nucleus | 53.57 | 38.9 |
| Os01t0674000-01 | Rice | nucleus | 51.19 | 38.86 |
| Solyc12g010890.1.1 | Tomato | nucleus | 49.6 | 38.7 |
| Bra003346.1-P | Field mustard | nucleus | 46.83 | 38.56 |
| CDX98311 | Canola | nucleus | 47.22 | 38.14 |
| AT3G58630.1 | Thale cress | nucleus | 48.41 | 38.01 |
| CDX67755 | Canola | nucleus | 47.62 | 37.97 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 53.17 | 37.96 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 51.98 | 37.75 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 52.78 | 37.68 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 53.17 | 37.64 |
| KRH11016 | Soybean | nucleus | 33.73 | 34.0 |
| PGSC0003DMT400020194 | Potato | plastid | 49.6 | 32.64 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 44.05 | 32.55 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 43.65 | 30.39 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 47.22 | 29.97 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 45.63 | 28.47 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 46.83 | 27.51 |
| GSMUA_Achr8P26150_001 | Banana | nucleus | 25.4 | 18.29 |
| GSMUA_Achr8P04010_001 | Banana | nucleus | 23.81 | 17.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P09160_001 | EnsemblPlants:GSMUA_Achr5T09160_001 | EnsemblPlantsGene:GSMUA_Achr5G09160_001 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF2 |
| PFAM:PF13837 | SEG:seg | UniParc:UPI0002963D9D | UniProt:M0SWZ5 | MapMan:15.5.20 | : |
Description
transcription factor like protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G09160_001]
Coordinates
chr5:-:6643488..6648290
Molecular Weight (calculated)
28158.6 Da
IEP (calculated)
10.691
GRAVY (calculated)
-0.881
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKREAASTR PPNPALPYRE DCWSEGETSA LVDAWGDRYV ELNRGNLRQK QWQEVADAVN SRSGAGRRPP RTDVQCKNRI DTLKKKYKVE KARIAGGGES
101: QWPFFSRLEA LVGSAPPPAA KKPSASPPLA LPLPSHRKGS ALPAALALRP AEPREKRTAA ATSSSSRSGK KPKRGREGEG NGIRELARAI MSFAEIYERV
201: EESKQRQMME LEKQRMEFAK ALEFQKMQII VDLQVQLAKI KRAKRSDTDS YS
101: QWPFFSRLEA LVGSAPPPAA KKPSASPPLA LPLPSHRKGS ALPAALALRP AEPREKRTAA ATSSSSRSGK KPKRGREGEG NGIRELARAI MSFAEIYERV
201: EESKQRQMME LEKQRMEFAK ALEFQKMQII VDLQVQLAKI KRAKRSDTDS YS
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.