Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98311 | Canola | nucleus | 80.69 | 83.01 |
| CDX67755 | Canola | nucleus | 80.37 | 81.65 |
| CDX71939 | Canola | nucleus, plastid | 76.01 | 81.06 |
| Bra003346.1-P | Field mustard | nucleus | 76.64 | 80.39 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 72.9 | 79.86 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 40.81 | 50.38 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 38.32 | 49.8 |
| KRH27047 | Soybean | nucleus | 46.42 | 48.53 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 38.01 | 48.41 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 40.5 | 48.15 |
| KRH22283 | Soybean | nucleus | 45.48 | 47.71 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 35.51 | 44.71 |
| Solyc12g010890.1.1 | Tomato | nucleus | 43.93 | 43.65 |
| AT3G11100.1 | Thale cress | nucleus | 30.84 | 39.76 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 42.37 | 39.19 |
| PGSC0003DMT400020194 | Potato | plastid | 43.93 | 36.81 |
| AT5G05550.2 | Thale cress | nucleus | 28.35 | 36.55 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 35.83 | 36.39 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 35.83 | 36.05 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 35.51 | 35.85 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 35.51 | 35.85 |
| Os05t0560600-01 | Rice | nucleus | 38.32 | 35.55 |
| Zm00001d011571_P001 | Maize | cytosol | 34.58 | 35.24 |
| Zm00001d043902_P001 | Maize | nucleus | 34.89 | 35.22 |
| EES18672 | Sorghum | nucleus | 38.01 | 35.16 |
| EES03423 | Sorghum | cytosol | 34.27 | 34.7 |
| Zm00001d038994_P001 | Maize | cytosol | 36.76 | 34.4 |
| Os01t0674000-01 | Rice | nucleus | 34.89 | 33.73 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 37.07 | 33.71 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 36.76 | 33.43 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 36.76 | 33.15 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 40.81 | 33.0 |
| Zm00001d030350_P001 | Maize | nucleus | 20.25 | 30.95 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 40.81 | 30.54 |
| AT3G14180.1 | Thale cress | nucleus | 32.4 | 23.48 |
| AT1G54060.1 | Thale cress | nucleus | 27.1 | 22.72 |
| AT3G24490.1 | Thale cress | nucleus | 21.18 | 20.42 |
Protein Annotations
| MapMan:15.5.20 | EntrezGene:825032 | UniProt:A0A178VE47 | ProteinID:AEE79808.1 | EMBL:AK118084 | ArrayExpress:AT3G58630 |
| EnsemblPlantsGene:AT3G58630 | RefSeq:AT3G58630 | TAIR:AT3G58630 | RefSeq:AT3G58630-TAIR-G | EnsemblPlants:AT3G58630.1 | TAIR:AT3G58630.1 |
| Unigene:At.34710 | EMBL:BT005520 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | RefSeq:NP_191422.2 | ProteinID:OAP03635.1 | PFAM:PF13837 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31307 |
| PANTHER:PTHR31307:SF2 | UniProt:Q8GXR6 | UniParc:UPI000000C68F | SEG:seg | : | : |
Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
Coordinates
chr3:-:21683530..21686039
Molecular Weight (calculated)
36048.3 Da
IEP (calculated)
9.928
GRAVY (calculated)
-0.823
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.