Factsheet for Zm00001d038994_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18672	Sorghum	nucleus	93.88	92.8
Os05t0560600-01	Rice	nucleus	79.59	78.9
TraesCS1D01G400500.1	Wheat	nucleus	73.47	71.39
TraesCS1B01G420500.1	Wheat	nucleus	74.05	71.35
TraesCS1A01G392300.1	Wheat	nucleus	73.18	71.1
Zm00001d011571_P001	Maize	cytosol	57.73	62.86
Zm00001d043902_P001	Maize	nucleus	56.85	61.32
GSMUA_Achr1P11500_001	Banana	nucleus	38.48	53.44
GSMUA_Achr5P09160_001	Banana	nucleus	39.07	53.17
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	40.23	53.08
GSMUA_Achr9P06410_001	Banana	nucleus	41.69	52.96
GSMUA_Achr1P27460_001	Banana	nucleus	38.78	52.16
VIT_10s0003g01300.t01	Wine grape	nucleus	36.73	41.72
KRH27047	Soybean	nucleus	37.03	41.37
KRH22283	Soybean	nucleus	36.73	41.18
Solyc02g076810.2.1	Tomato	cytosol	33.53	40.93
PGSC0003DMT400026432	Potato	cytosol	34.4	40.83
Bra007407.1-P	Field mustard	nucleus, plastid	34.69	40.61
KRH21272	Soybean	nucleus	36.15	39.74
Zm00001d030350_P001	Maize	nucleus	23.91	39.05
CDX71939	Canola	nucleus, plastid	34.11	38.87
Bra003346.1-P	Field mustard	nucleus	34.4	38.56
CDX98311	Canola	nucleus	34.11	37.5
Solyc12g010890.1.1	Tomato	nucleus	35.28	37.46
CDX67755	Canola	nucleus	34.4	37.34
AT3G58630.1	Thale cress	nucleus	34.4	36.76
KRH11016	Soybean	nucleus	26.53	36.4
VIT_12s0028g02150.t01	Wine grape	cytosol	32.07	31.7
PGSC0003DMT400020194	Potato	plastid	34.4	30.81
PGSC0003DMT400052607	Potato	nucleus, plastid	32.94	28.46
Zm00001d003549_P001	Maize	nucleus	30.9	27.53
Zm00001d010753_P001	Maize	nucleus	25.66	26.83
Solyc07g055100.2.1	Tomato	nucleus, plastid	32.65	26.11
Zm00001d025514_P001	Maize	nucleus	29.74	26.02
Zm00001d016876_P001	Maize	nucleus, plastid	28.57	24.38
Zm00001d011730_P001	Maize	nucleus, plastid	20.41	20.0
Zm00001d042917_P001	Maize	golgi, plasma membrane	26.24	13.55

Protein Annotations

EMBL:BT039806	EMBL:BT043387	EMBL:EU967122	EMBL:HQ858672	EnsemblPlants:Zm00001d038994_P001	EnsemblPlants:Zm00001d038994_T001
EnsemblPlantsGene:Zm00001d038994	EntrezGene:100272931	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF33	PFAM:PF13837
ProteinID:AQK88423.1	SEG:seg	UniParc:UPI00017B77BC	UniProt:B4FRR8	MapMan:15.5.20	:

Description

Trihelix-transcription factor 1sequence-specific DNA binding transcription factors

Coordinates

chr6:+:168356470..168357501

Molecular Weight (calculated)

36920.8 Da

IEP (calculated)

10.530

GRAVY (calculated)

-0.570

Length

343 amino acids

Sequence
(BLAST)

001: MEVREMAMAA AAAAAASGGG GVKLPPPNPN LPYREDCWSD GETAALVSAW GSRYVELNRG NLRQKQWQEV ADAVNSRRGA SARRRPPRTD IQCKNRVDTL
101: KKKYKAELAR NAPSAWSYFP ELDRLVGPTL SASASKRPLA SLPPQFALPM HPPAVRRPPS PSPSSSSPPQ PPMALPLPNY RRGSPLPAAA LIQKEAAAAA
201: AAASDSEDSD DAAGGNNHKL PRSPSRSVSS LSASNKKRCR DEAGSSADKG FRELARAIEA FAEMYERVES AKQKHVVEME RQRIEFLKQL EVKRMENFVD
301: AHVKLARAKR TKKTTGGAAD GAGGMELVAT VAALPFVSTS TFL

Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)

001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN

Arabidopsis Description

ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.