Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12241 | Sorghum | nucleus | 91.58 | 87.99 |
| Zm00001d003549_P001 | Maize | nucleus | 83.16 | 84.68 |
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 71.43 | 67.8 |
| TraesCS2B01G332100.1 | Wheat | nucleus, plastid | 71.94 | 67.79 |
| TraesCS2A01G313300.1 | Wheat | nucleus, plastid | 71.17 | 67.07 |
| Os04t0445600-00 | Rice | nucleus | 70.66 | 66.43 |
| HORVU2Hr1G077940.1 | Barley | cytosol, nucleus, plastid | 36.73 | 64.29 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 56.38 | 54.98 |
| Zm00001d010753_P001 | Maize | nucleus | 40.82 | 48.78 |
| KRH06239 | Soybean | nucleus | 36.73 | 38.92 |
| KRH47662 | Soybean | nucleus, plastid | 36.22 | 38.59 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 32.65 | 37.54 |
| CDY33246 | Canola | nucleus | 28.57 | 36.6 |
| CDY39099 | Canola | nucleus | 29.34 | 36.28 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 33.67 | 36.26 |
| CDY39101 | Canola | nucleus, plastid | 28.06 | 36.07 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 28.32 | 35.81 |
| Bra021536.1-P | Field mustard | nucleus | 27.81 | 35.62 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 32.65 | 35.36 |
| Solyc03g122030.1.1 | Tomato | nucleus | 32.4 | 34.99 |
| CDX75751 | Canola | nucleus | 32.4 | 34.14 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 32.4 | 34.05 |
| CDY61477 | Canola | nucleus, plastid | 25.77 | 33.55 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 34.44 | 33.42 |
| Zm00001d011571_P001 | Maize | cytosol | 26.53 | 33.02 |
| CDY02487 | Canola | nucleus, plastid | 25.77 | 32.79 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 25.0 | 32.56 |
| Zm00001d043902_P001 | Maize | nucleus | 26.28 | 32.39 |
| Zm00001d030350_P001 | Maize | nucleus | 17.35 | 32.38 |
| AT3G14180.1 | Thale cress | nucleus | 34.95 | 30.93 |
| CDY08216 | Canola | nucleus | 25.26 | 30.18 |
| Bra014370.1-P | Field mustard | nucleus | 25.51 | 29.85 |
| Zm00001d038994_P001 | Maize | cytosol | 26.02 | 29.74 |
| AT1G54060.1 | Thale cress | nucleus | 27.55 | 28.2 |
| CDY26148 | Canola | nucleus, plastid | 24.74 | 27.17 |
| CDY51405 | Canola | nucleus | 8.67 | 26.77 |
| Zm00001d042917_P001 | Maize | golgi, plasma membrane | 43.88 | 25.9 |
| Bra030909.1-P | Field mustard | nucleus | 8.42 | 25.78 |
| CDY33093 | Canola | cytosol, plastid | 25.77 | 23.11 |
| Zm00001d011730_P001 | Maize | nucleus, plastid | 19.13 | 21.43 |
Protein Annotations
| EMBL:BT068634 | EMBL:HQ858795 | EMBL:KJ726784 | EnsemblPlants:Zm00001d025514_P001 | EnsemblPlants:Zm00001d025514_T001 | EnsemblPlantsGene:Zm00001d025514 |
| EntrezGene:100285537 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF12 | PFAM:PF13837 | ProteinID:AQK43888.1 |
| SEG:seg | UniParc:UPI000195CC9C | UniProt:C0PK15 | MapMan:15.5.20 | : | : |
Description
Trihelix-transcription factor 2Trihelix transcription factor ASIL2
Coordinates
chr10:-:120969085..120970263
Molecular Weight (calculated)
42108.5 Da
IEP (calculated)
7.140
GRAVY (calculated)
-0.846
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDDDVSPS SSPSPPSSSA LPVDGPVTVA AAPPGASMAV ALPIHRTAAS LYASAGGDGG GGGGREDAWS DGATSALIDA WGERFVALGR GSLRHPQWQE
101: VAEAVSSRDG YSKAPKSDIQ CKNRIDTLKK KYKVERIKPV SGWQFFDRLD FLLAPTYGNK PGNGGGGHNS NSRSQMPAAP RVGFPQRSRT PLMPAAGSGA
201: KRRAPSPEPS VSSDSSDGFP PMPALPAVNG KRKRTDDGRS DGGGDRAQGL RELAQAIRRL GEAYERVEAT KLEQEAEMER RRMDFAQELE SQRVRFFLDT
301: QMELTQAKNH ASPATAAVPA VGSSRRIPRM SLVTDAGGSS NHHSRYRISH VDRHRHAPRP HYQQYHDNNN AGAAAASDGE QSDEEDYEEE SQ
101: VAEAVSSRDG YSKAPKSDIQ CKNRIDTLKK KYKVERIKPV SGWQFFDRLD FLLAPTYGNK PGNGGGGHNS NSRSQMPAAP RVGFPQRSRT PLMPAAGSGA
201: KRRAPSPEPS VSSDSSDGFP PMPALPAVNG KRKRTDDGRS DGGGDRAQGL RELAQAIRRL GEAYERVEAT KLEQEAEMER RRMDFAQELE SQRVRFFLDT
301: QMELTQAKNH ASPATAAVPA VGSSRRIPRM SLVTDAGGSS NHHSRYRISH VDRHRHAPRP HYQQYHDNNN AGAAAASDGE QSDEEDYEEE SQ
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Arabidopsis Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.