Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15479 | Sorghum | nucleus | 80.56 | 81.33 |
| Zm00001d052798_P001 | Maize | nucleus | 55.8 | 60.96 |
| Os08t0484700-01 | Rice | nucleus | 53.29 | 53.97 |
| TraesCS5D01G550500.1 | Wheat | nucleus | 50.78 | 53.29 |
| TraesCS4A01G315300.1 | Wheat | nucleus | 51.1 | 52.92 |
| TraesCS5B01G564200.1 | Wheat | nucleus | 49.84 | 51.62 |
| GSMUA_Achr6P04170_001 | Banana | nucleus | 39.19 | 46.13 |
| VIT_07s0005g06670.t01 | Wine grape | nucleus | 31.03 | 35.11 |
| KRH07500 | Soybean | cytosol, mitochondrion, nucleus | 27.27 | 32.71 |
| Solyc06g083430.1.1 | Tomato | nucleus | 31.66 | 31.08 |
| KRH66081 | Soybean | cytosol | 26.96 | 30.71 |
| PGSC0003DMT400051788 | Potato | nucleus | 30.72 | 30.06 |
| AT3G24860.1 | Thale cress | nucleus | 26.65 | 27.42 |
| CDY52087 | Canola | nucleus, plastid | 24.76 | 26.6 |
| Zm00001d029974_P001 | Maize | nucleus | 26.33 | 26.17 |
| Zm00001d000045_P001 | Maize | nucleus | 25.71 | 25.79 |
| CDX77381 | Canola | nucleus | 23.82 | 25.59 |
| Bra015090.1-P | Field mustard | nucleus | 23.82 | 25.59 |
| CDY39785 | Canola | nucleus | 21.0 | 24.1 |
| Zm00001d021389_P001 | Maize | cytosol | 18.81 | 17.91 |
| Zm00001d006331_P001 | Maize | cytosol | 18.18 | 17.37 |
Protein Annotations
| EMBL:BT040453 | EMBL:EU954325 | EnsemblPlants:Zm00001d031266_P001 | EnsemblPlants:Zm00001d031266_T001 | EnsemblPlantsGene:Zm00001d031266 | EntrezGene:100279405 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:IPR006578 | InterPro:MADF-dom |
| ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF17 | PFAM:PF13837 | ProteinID:AIB05344.1 | ProteinID:ONM02583.1 |
| SEG:seg | SMART:SM00595 | UniParc:UPI00017B78E2 | UniProt:B4FTL5 | MapMan:15.5.20 | : |
Description
Trihelix-transcription factor 8Homeodomain-like superfamily protein
Coordinates
chr1:+:184358938..184359897
Molecular Weight (calculated)
35875.9 Da
IEP (calculated)
5.555
GRAVY (calculated)
-0.966
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEPPPPPL ARKSAPAQPW SHVETTHLID AYEERWTALR RGQLKAHQWE EVAAEVAARC AATPGVVAQR KTGTQCRHKL EKLRKRYRTE GARPVTSLWP
101: YFRRMDRLER GPLAVASSAY PAATGSPPAA DGDEEGEEEE EEVEEEEEEE DVQEENEEEE ELAPRNNNTR SINGIIREFG TGLAPRHPQL QLHPPPPSIT
201: PSIAPPRKRV AYEAFQAKAA AAAVKAKDDE EEAMEMARRR GSSGRPVAQL SAVLRDFGEG VMRLERRRME VQWEIERGWQ EADARHARML QDAQRQLRDT
301: VAGACALPPK KARRDHGDS
101: YFRRMDRLER GPLAVASSAY PAATGSPPAA DGDEEGEEEE EEVEEEEEEE DVQEENEEEE ELAPRNNNTR SINGIIREFG TGLAPRHPQL QLHPPPPSIT
201: PSIAPPRKRV AYEAFQAKAA AAAVKAKDDE EEAMEMARRR GSSGRPVAQL SAVLRDFGEG VMRLERRRME VQWEIERGWQ EADARHARML QDAQRQLRDT
301: VAGACALPPK KARRDHGDS
001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.