Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015090.1-P | Field mustard | nucleus | 66.77 | 69.7 |
| CDX77381 | Canola | nucleus | 66.77 | 69.7 |
| CDY52087 | Canola | nucleus, plastid | 63.87 | 66.67 |
| CDY39785 | Canola | nucleus | 51.61 | 57.55 |
| VIT_07s0005g06670.t01 | Wine grape | nucleus | 33.55 | 36.88 |
| GSMUA_Achr6P04170_001 | Banana | nucleus | 28.39 | 32.47 |
| KRH07500 | Soybean | cytosol, mitochondrion, nucleus | 27.42 | 31.95 |
| Solyc06g083430.1.1 | Tomato | nucleus | 30.97 | 29.54 |
| KRH66081 | Soybean | cytosol | 26.45 | 29.29 |
| PGSC0003DMT400051788 | Potato | nucleus | 30.32 | 28.83 |
| Zm00001d031266_P001 | Maize | nucleus | 27.42 | 26.65 |
| EES15479 | Sorghum | nucleus | 26.45 | 25.95 |
| TraesCS5B01G564200.1 | Wheat | nucleus | 25.16 | 25.32 |
| TraesCS4A01G315300.1 | Wheat | nucleus | 25.16 | 25.32 |
| Zm00001d052798_P001 | Maize | nucleus | 23.55 | 25.0 |
| TraesCS5D01G550500.1 | Wheat | nucleus | 23.87 | 24.34 |
| Os08t0484700-01 | Rice | nucleus | 22.9 | 22.54 |
| AT3G54390.2 | Thale cress | nucleus | 18.71 | 18.59 |
| AT2G44730.1 | Thale cress | nucleus | 22.26 | 18.55 |
| AT4G17060.1 | Thale cress | nucleus | 9.68 | 9.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:822084 | ProteinID:AEE76954.1 | EMBL:AK118157 | ArrayExpress:AT3G24860 |
| EnsemblPlantsGene:AT3G24860 | RefSeq:AT3G24860 | TAIR:AT3G24860 | RefSeq:AT3G24860-TAIR-G | EnsemblPlants:AT3G24860.1 | TAIR:AT3G24860.1 |
| Unigene:At.37454 | ProteinID:BAB02896.1 | EMBL:BT005491 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_189130.1 |
| PFAM:PF13837 | PO:PO:0000293 | PFscan:PS50090 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF17 | UniProt:Q9LRX5 |
| UniParc:UPI000000C67B | SEG:seg | : | : | : | : |
Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
Coordinates
chr3:+:9073623..9074682
Molecular Weight (calculated)
35193.2 Da
IEP (calculated)
9.759
GRAVY (calculated)
-0.994
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.