Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24860.1 | EES03423 | AT3G58630.1 | 21798944 |
| AT3G24860.1 | EES18672 | AT3G58630.1 | 21798944 |
| AT3G24860.1 | EES06120 | AT4G10840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031266_P001 | Maize | nucleus | 81.33 | 80.56 |
| Os08t0484700-01 | Rice | nucleus | 56.33 | 56.51 |
| TraesCS5D01G550500.1 | Wheat | nucleus | 53.48 | 55.59 |
| TraesCS4A01G315300.1 | Wheat | nucleus | 53.48 | 54.87 |
| TraesCS5B01G564200.1 | Wheat | nucleus | 51.9 | 53.25 |
| GSMUA_Achr6P04170_001 | Banana | nucleus | 37.97 | 44.28 |
| VIT_07s0005g06670.t01 | Wine grape | nucleus | 30.38 | 34.04 |
| PGSC0003DMT400051788 | Potato | nucleus | 30.7 | 29.75 |
| KRH07500 | Soybean | cytosol, mitochondrion, nucleus | 25.0 | 29.7 |
| KRH66081 | Soybean | cytosol | 25.95 | 29.29 |
| Solyc06g083430.1.1 | Tomato | nucleus | 30.06 | 29.23 |
| AT3G24860.1 | Thale cress | nucleus | 25.95 | 26.45 |
| CDY39785 | Canola | nucleus | 22.47 | 25.54 |
| EER94471 | Sorghum | nucleus | 25.95 | 25.47 |
| CDY52087 | Canola | nucleus, plastid | 23.1 | 24.58 |
| Bra015090.1-P | Field mustard | nucleus | 22.47 | 23.91 |
| CDX77381 | Canola | nucleus | 22.47 | 23.91 |
| KXG36174 | Sorghum | cytosol | 18.04 | 16.91 |
Protein Annotations
| EnsemblPlants:EES15479 | EnsemblPlantsGene:SORBI_3007G225600 | EntrezGene:8055378 | InterPro:IPR006578 | InterPro:MADF-dom | ncoils:Coil |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF17 | PFAM:PF13837 | ProteinID:EES15479 | ProteinID:EES15479.1 | RefSeq:XP_002445984.1 |
| SEG:seg | SMART:SM00595 | unigene:Sbi.15723 | UniParc:UPI0001A879B7 | UniProt:C5YJQ3 | MapMan:15.5.20 |
Description
hypothetical protein
Coordinates
chr7:-:65300284..65301601
Molecular Weight (calculated)
35392.2 Da
IEP (calculated)
5.527
GRAVY (calculated)
-0.959
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MMADDPPRRP PSALARKSAP AQPWSHVETM HLIDAYEERW TALRRGQLKA HQWEEVAAEV VARCAATPGV VAQRKTGTQC RHKLEKLRKR YRNEGARPVT
101: SLWPYFRRMD RLERGPLAAY PAAAGSPPAA DGDEEDEEEE EEEEEEEDAQ EEEEEEEELV PRNNHTRSIN GIIREFGTGL APRHPQLQLH APPSSITPST
201: APPRKRVAYE AFQAKAAAAA KAKDDDDEAV EMAYGGGSSG RGAGAQLSAV LRDFGEGVMR LERRRMEVQW EIERGWQEAD ARHARMLQDA QRQLRDTVAA
301: ACALPPKKAR RDHGDS
101: SLWPYFRRMD RLERGPLAAY PAAAGSPPAA DGDEEDEEEE EEEEEEEDAQ EEEEEEEELV PRNNHTRSIN GIIREFGTGL APRHPQLQLH APPSSITPST
201: APPRKRVAYE AFQAKAAAAA KAKDDDDEAV EMAYGGGSSG RGAGAQLSAV LRDFGEGVMR LERRRMEVQW EIERGWQEAD ARHARMLQDA QRQLRDTVAA
301: ACALPPKKAR RDHGDS
001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.