Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015090.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY52087 | Canola | nucleus, plastid | 85.19 | 85.19 |
| AT3G24860.1 | Thale cress | nucleus | 69.7 | 66.77 |
| CDY39785 | Canola | nucleus | 54.88 | 58.63 |
| VIT_07s0005g06670.t01 | Wine grape | nucleus | 34.68 | 36.52 |
| KRH07500 | Soybean | cytosol, mitochondrion, nucleus | 30.98 | 34.59 |
| KRH66081 | Soybean | cytosol | 30.3 | 32.14 |
| GSMUA_Achr6P04170_001 | Banana | nucleus | 28.96 | 31.73 |
| Solyc06g083430.1.1 | Tomato | nucleus | 31.99 | 29.23 |
| PGSC0003DMT400051788 | Potato | nucleus | 31.65 | 28.83 |
| CDY48253 | Canola | nucleus | 17.17 | 28.49 |
| TraesCS5B01G564200.1 | Wheat | nucleus | 26.26 | 25.32 |
| CDX74679 | Canola | nucleus | 24.92 | 24.5 |
| Zm00001d031266_P001 | Maize | nucleus | 25.59 | 23.82 |
| TraesCS5D01G550500.1 | Wheat | nucleus | 24.24 | 23.68 |
| Zm00001d052798_P001 | Maize | nucleus | 23.23 | 23.63 |
| CDX83420 | Canola | nucleus | 27.95 | 23.58 |
| TraesCS4A01G315300.1 | Wheat | nucleus | 23.91 | 23.05 |
| Os08t0484700-01 | Rice | nucleus | 23.91 | 22.54 |
| EES15479 | Sorghum | nucleus | 23.91 | 22.47 |
| CDY42958 | Canola | nucleus | 23.23 | 22.26 |
| CDX83751 | Canola | nucleus | 9.76 | 21.97 |
| CDX95611 | Canola | nucleus | 25.93 | 21.81 |
| CDY71514 | Canola | nucleus | 20.88 | 20.6 |
| CDX73485 | Canola | nucleus | 20.2 | 19.54 |
| CDY35602 | Canola | cytosol | 22.9 | 16.43 |
Protein Annotations
| EnsemblPlants:CDX77381 | EnsemblPlantsGene:GSBRNA2T00128207001 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | PANTHER:PTHR31307 |
| PANTHER:PTHR31307:SF17 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDX77381 | ProteinID:CDX77381.1 | SEG:seg |
| UniParc:UPI0002540BFA | MapMan:15.5.20 | : | : | : | : |
Description
BnaA07g05190D
Coordinates
chrLK031811:-:96715..97608
Molecular Weight (calculated)
33456.6 Da
IEP (calculated)
10.127
GRAVY (calculated)
-0.902
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPSPTPSP PPPSDSNPNP PHQNPPPSSS TAIQTPPSPQ TTVVALGAST SAFARKTQPV LWTEDETLLL IDSYKEKWYA VGRGPLKSNQ WEEISVSVSA
101: RSGVERSATQ CRHKMEKLRK RFRAERQSMG PISIWPFYSQ MEELDSNPAP ISARPLTRLP PPTNHYAEDQ YDDEDDDDED ESLNKSRSIN HIVRRPGTVN
201: RFAGVGGGLL QWGQKERSKR KRKDEGSGGE RRMKGARAVA YEIRAFAEKT MLMEKKKMEF AKETAKLRKE MEMKRLKLIQ SSQTQLLQFL NTSFASL
101: RSGVERSATQ CRHKMEKLRK RFRAERQSMG PISIWPFYSQ MEELDSNPAP ISARPLTRLP PPTNHYAEDQ YDDEDDDDED ESLNKSRSIN HIVRRPGTVN
201: RFAGVGGGLL QWGQKERSKR KRKDEGSGGE RRMKGARAVA YEIRAFAEKT MLMEKKKMEF AKETAKLRKE MEMKRLKLIQ SSQTQLLQFL NTSFASL
001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.