CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73485	Canola	nucleus	94.68	92.83
Bra007069.1-P	Field mustard	nucleus	94.02	91.0
AT3G54390.2	Thale cress	nucleus	61.46	59.29
CDX83751	Canola	nucleus	24.58	56.06
VIT_13s0084g00800.t01	Wine grape	nucleus	58.14	54.86
KRH20709	Soybean	nucleus	54.15	50.0
KRH30077	Soybean	nucleus	56.15	49.56
KRH13365	Soybean	nucleus	53.82	48.5
KRH62829	Soybean	nucleus	57.48	47.53
Solyc01g096470.2.1	Tomato	nucleus	53.49	46.94
PGSC0003DMT400013829	Potato	nucleus	51.49	45.06
GSMUA_Achr4P05890_001	Banana	nucleus	39.2	38.56
GSMUA_Achr9P22780_001	Banana	mitochondrion	37.54	32.85
KXG36174	Sorghum	cytosol	35.55	31.75
Os09t0558200-01	Rice	cytosol	35.22	31.55
Zm00001d021389_P001	Maize	cytosol	34.88	31.34
Zm00001d006331_P001	Maize	cytosol	34.22	30.84
HORVU5Hr1G088750.1	Barley	cytosol	15.95	30.77
HORVU5Hr1G088770.7	Barley	nucleus	36.88	30.41
TraesCS5B01G362600.2	Wheat	nucleus	35.22	30.37
TraesCS5D01G369500.2	Wheat	nucleus	35.22	30.29
TraesCS5A01G360100.1	Wheat	nucleus	35.22	30.2
CDY48253	Canola	nucleus	14.62	24.58
CDY39785	Canola	nucleus	22.26	24.1
CDX74679	Canola	nucleus	22.92	22.85
CDY52087	Canola	nucleus, plastid	21.59	21.89
CDX95611	Canola	nucleus	24.92	21.25
CDY42958	Canola	nucleus	21.59	20.97
CDX77381	Canola	nucleus	20.6	20.88
CDX83420	Canola	nucleus	23.26	19.89
CDY35602	Canola	cytosol	21.59	15.7

Protein Annotations

EnsemblPlants:CDY71514	EnsemblPlantsGene:GSBRNA2T00016746001	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF7	PFAM:PF13837
ProteinID:CDY71514	ProteinID:CDY71514.1	SEG:seg	UniParc:UPI0004EE8FD6	UniProt:A0A078JXT8	MapMan:15.5.20

Description

BnaAnng37740DBnaAnng37740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXT8]

Coordinates

chrLK046168:-:232..2075

Molecular Weight (calculated)

33816.1 Da

IEP (calculated)

9.858

GRAVY (calculated)

-0.889

Length

301 amino acids

Sequence
(BLAST)

001: MEDGDSNQEH PQPLPTNHDA SSPKKPSTSS IVVDRLKRDE WSEGAVSSLL EAYETKWALR NRAKLKGQDW EDVARHVSSR ASHTKSPKTQ TQCKNKIESM
101: KKRYRSESAT AEGSSWPLYS RLDHLLRGNA STSAVLPLNC SAPLLLLEPP LAAVTHPPQQ PPAAQMSHGS NGVGTIKEEG FKDDHKPERA TEMDTDSSTP
201: VLCREKAKVR PKKVRRRYKE EKEEIAGSIR WLAEVVMRTE RARMETMKEI EKMRAEAEVK RGEMDLKRTE IMANTQIEIA RLFAASVHKG GVDSSLRIGR
301: N

Best Arabidopsis Sequence Match ( AT3G54390.2 )
(BLAST)

001: MFNSIHSLKS HLKKKYMENG ESNQENLKSL NHDESLKKPS ASSVVVDRLK RDEWSEGAVS TLLEAYESKW VLRNRAKLKG QDWEDVAKHV SSRATHTKSP
101: KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDHLLR GTQPQPQPQA VLPLNCSVPL LLLEPPLPAV AHPPQISYGS NGVGKIPKED GFKPENKPEK
201: DAEMDTDSST PVVKTKVRGK KVKRRYKEEK EEIAGSIRWL AEVVMRSERA RMETMKEIER MRAEAEAKRG ELDLKRTEIM ANTQLEIARI FAAAASSGQN
301: KGVDSSLRIG RN

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.