CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004859.1-P	Field mustard	nucleus	98.34	98.34
CDY48253	Canola	nucleus	47.02	79.33
CDX95611	Canola	nucleus	61.92	52.97
CDX83420	Canola	nucleus	60.93	52.27
AT2G44730.1	Thale cress	nucleus	56.95	46.24
KRH50980	Soybean	nucleus	17.22	43.7
KRH41794	Soybean	nucleus	45.7	42.46
KRH40215	Soybean	nucleus	43.05	40.37
PGSC0003DMT400004269	Potato	plastid	43.38	39.82
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	42.05	39.69
Solyc01g088820.2.1	Tomato	plastid	41.72	38.3
CDY42958	Canola	nucleus	31.79	30.97
GSMUA_Achr11P...	Banana	plastid	32.78	30.65
GSMUA_Achr11P...	Banana	nucleus	21.19	29.22
KRH01003	Soybean	nucleus	25.83	28.89
CDY39785	Canola	nucleus	23.84	25.9
CDY52087	Canola	nucleus, plastid	24.83	25.25
CDX77381	Canola	nucleus	24.5	24.92
CDY35602	Canola	cytosol	33.77	24.64
CDX83751	Canola	nucleus	10.26	23.48
CDY71514	Canola	nucleus	22.85	22.92
CDX73485	Canola	nucleus	22.85	22.48

Protein Annotations

EnsemblPlants:CDX74679	EnsemblPlantsGene:GSBRNA2T00116631001	InterPro:IPR006578	InterPro:IPR017877	InterPro:MADF-dom	InterPro:Myb-like_dom
ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX74679
ProteinID:CDX74679.1	SEG:seg	SMART:SM00595	UniParc:UPI0004EEC1AE	MapMan:15.5.20	:

Description

BnaA05g04250D

Coordinates

chrLK031802:-:135304..136814

Molecular Weight (calculated)

33521.4 Da

IEP (calculated)

10.065

GRAVY (calculated)

-0.760

Length

302 amino acids

Sequence
(BLAST)

001: MSDPDSPPTH DPIPDRDQPE PASATDPKLP SVPKSSRRLP PPCWSLEETT ALIDGYREKW HALGRGNLKA NHWDDVAEAV AAACPGVAPR KTAVQCRHKM
101: EKLRQRYRAE IQRARSVPVA RFVSSWVHYK RMEAMEITKP DGEENQFSGG GPTPRFFNRN GGGGGGGIRI RIPTGVSIAQ PGPRIEPKSF GISTNPRPGR
201: VVGTGSSYGG RVVGGGSEMK MMCDDTIGSA IKLLGDAMLR TEEKKMEMTR EIEGMRMEME MKRTKMVLES QQRIVEAFAR TMSENLEEEK KMKKARRMSS
301: VE

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.