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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
YLoc:cytosol
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH01003 Soybean nucleus 53.78 23.7
KRH41794 Soybean nucleus 60.5 22.15
KRH40215 Soybean nucleus 53.78 19.88
VIT_15s0021g01220.t01 Wine grape nucleus, plastid 50.42 18.75
Solyc01g088820.2.1 Tomato plastid 49.58 17.93
PGSC0003DMT400004269 Potato plastid 49.58 17.93
Bra004859.1-P Field mustard nucleus 43.7 17.22
CDX74679 Canola nucleus 43.7 17.22
GSMUA_Achr11P... Banana plastid 41.18 15.17
Bra000360.1-P Field mustard nucleus 45.38 15.17
CDX83420 Canola nucleus 44.54 15.06
CDX95611 Canola nucleus 42.86 14.45
KRH66081 Soybean cytosol 32.77 13.93
KRH07500 Soybean cytosol, mitochondrion, nucleus 31.09 13.91
AT2G44730.1 Thale cress nucleus 42.02 13.44
KRH30077 Soybean nucleus 29.41 10.26
KRH20709 Soybean nucleus 26.05 9.51
KRH13365 Soybean nucleus 25.21 8.98
KRH62829 Soybean nucleus 26.05 8.52
CDY48253 Canola nucleus 9.24 6.15
GSMUA_Achr11P... Banana nucleus 9.24 5.02
Protein Annotations
EMBL:ACUP02004720EnsemblPlants:KRH50980EnsemblPlantsGene:GLYMA_07G2545002PANTHER:PTHR31307PANTHER:PTHR31307:SF3ProteinID:KRH50980
ProteinID:KRH50980.1SEG:segUniParc:UPI0006EDDFAFUniProt:A0A0R0JGQ7MapMan:15.5.20:
Description
hypothetical protein
Coordinates
chr7:-:43132086..43132446
Molecular Weight (calculated)
13316.3 Da
IEP (calculated)
10.639
GRAVY (calculated)
-0.703
Length
119 amino acids
Sequence
(BLAST)
001: IRIPTGLGTV QPGSGSKVFG NQKFSPNLNQ NPNPNLGNKR ERDPVGELVA AIKVLGDGFV RTEQMKMEMA REIETMRMEM EMKRTEMILE SQQRIVEAFA
101: KAISEKKKKA KTVSSPQQP
Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)
001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.