Factsheet for Bra000360.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83420	Canola	nucleus	92.42	93.47
CDX95611	Canola	nucleus	79.49	80.17
Bra004859.1-P	Field mustard	nucleus	53.37	62.91
AT2G44730.1	Thale cress	nucleus	55.9	53.49
KRH50980	Soybean	nucleus	15.17	45.38
KRH41794	Soybean	nucleus	40.73	44.62
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	38.2	42.5
PGSC0003DMT400004269	Potato	plastid	37.36	40.43
KRH40215	Soybean	nucleus	35.67	39.44
Solyc01g088820.2.1	Tomato	plastid	35.96	38.91
GSMUA_Achr11P...	Banana	plastid	31.46	34.67
GSMUA_Achr11P...	Banana	nucleus	19.94	32.42
KRH01003	Soybean	nucleus	22.19	29.26
Bra015090.1-P	Field mustard	nucleus	23.03	27.61
Bra040110.1-P	Field mustard	cytosol	31.18	26.88
Bra007069.1-P	Field mustard	nucleus	20.51	23.47

Protein Annotations

EnsemblPlants:Bra000360.1	EnsemblPlants:Bra000360.1-P	EnsemblPlantsGene:Bra000360	Gene3D:1.10.10.60	InterPro:IPR006578	InterPro:IPR017877
InterPro:MADF-dom	InterPro:Myb-like_dom	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3
PFAM:PF13837	PFscan:PS50090	SEG:seg	SMART:SM00595	SMART:SM00717	UniParc:UPI000253FDD0
UniProt:M4C832	MapMan:15.5.20	:	:	:	:

Description

AT2G44730 (E=8e-099) | transcription factor

Coordinates

chrA03:-:10723348..10724418

Molecular Weight (calculated)

39302.9 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.818

Length

356 amino acids

Sequence
(BLAST)

001: MSDPDSPLEQ VPLPVRNKSP PPQPDDSVTD LTIASTPAAV ATKNSRRLPP PCWSLEETIA LIDGYRDKWH ALNRGNLKAN HWEEVAEAVA GNCPGVTPKK
101: TAVQCRHKME KLRKRYRTEI QRARSVPVAR FVSSWVHYKR MEAMEDRPES KPGGGDEERD ELYGGGGSVG RSTPRFFNRN GTAGGSSSSG GIRIRIPTGV
201: SIAQPGPRFP GKIDPKYTAS ASSRLGRGVG GGTSYGARGV RIQEGGGGGE ERAGKRGREM MMMMTTEEGE EEEESDDPMV EIASAIKLLG DTLLRTEEKK
301: MEMTREIEAM RMEMEMKRTK MILESQQRIV EAFAKSMSEN LEEKKKKARR VSSLPP

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.