Factsheet for Bra015090.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000724.1-P
Bra003346.1-P
Bra007407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24860.1	Bra003346.1-P	AT3G58630.1	21798944
AT3G24860.1	Bra007407.1-P	AT3G58630.1	21798944
AT3G24860.1	Bra000724.1-P	AT4G10840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77381	Canola	nucleus	100.0	100.0
AT3G24860.1	Thale cress	nucleus	69.7	66.77
VIT_07s0005g06670.t01	Wine grape	nucleus	34.68	36.52
KRH07500	Soybean	cytosol, mitochondrion, nucleus	30.98	34.59
KRH66081	Soybean	cytosol	30.3	32.14
GSMUA_Achr6P04170_001	Banana	nucleus	28.96	31.73
Solyc06g083430.1.1	Tomato	nucleus	31.99	29.23
PGSC0003DMT400051788	Potato	nucleus	31.65	28.83
TraesCS5B01G564200.1	Wheat	nucleus	26.26	25.32
Bra004859.1-P	Field mustard	nucleus	25.25	24.83
Zm00001d031266_P001	Maize	nucleus	25.59	23.82
TraesCS5D01G550500.1	Wheat	nucleus	24.24	23.68
Zm00001d052798_P001	Maize	nucleus	23.23	23.63
TraesCS4A01G315300.1	Wheat	nucleus	23.91	23.05
Bra000360.1-P	Field mustard	nucleus	27.61	23.03
Os08t0484700-01	Rice	nucleus	23.91	22.54
EES15479	Sorghum	nucleus	23.91	22.47
Bra007069.1-P	Field mustard	nucleus	19.53	18.65
Bra040110.1-P	Field mustard	cytosol	22.9	16.46

Protein Annotations

EnsemblPlants:Bra015090.1	EnsemblPlants:Bra015090.1-P	EnsemblPlantsGene:Bra015090	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
PANTHER:PTHR31307	PANTHER:PTHR31307:SF17	PFAM:PF13837	PFscan:PS50090	SEG:seg	UniParc:UPI0002540BFA
UniProt:M4DF18	MapMan:15.5.20	:	:	:	:

Description

AT3G24860 (E=1e-058) | hydroxyproline-rich glycoprotein family protein

Coordinates

chrA07:-:3565879..3566772

Molecular Weight (calculated)

33456.6 Da

IEP (calculated)

10.127

GRAVY (calculated)

-0.902

Length

297 amino acids

Sequence
(BLAST)

001: MATPSPTPSP PPPSDSNPNP PHQNPPPSSS TAIQTPPSPQ TTVVALGAST SAFARKTQPV LWTEDETLLL IDSYKEKWYA VGRGPLKSNQ WEEISVSVSA
101: RSGVERSATQ CRHKMEKLRK RFRAERQSMG PISIWPFYSQ MEELDSNPAP ISARPLTRLP PPTNHYAEDQ YDDEDDDDED ESLNKSRSIN HIVRRPGTVN
201: RFAGVGGGLL QWGQKERSKR KRKDEGSGGE RRMKGARAVA YEIRAFAEKT MLMEKKKMEF AKETAKLRKE MEMKRLKLIQ SSQTQLLQFL NTSFASL

Best Arabidopsis Sequence Match ( AT3G24860.1 )
(BLAST)

001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.