Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24860.1 | KRH22283 | AT3G58630.1 | 21798944 |
| AT3G24860.1 | KRH27047 | AT3G58630.1 | 21798944 |
| AT3G24860.1 | KRH41360 | AT4G10840.1 | 21798944 |
| AT3G24860.1 | KRH60081 | AT4G10840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66081 | Soybean | cytosol | 75.19 | 71.43 |
| VIT_07s0005g06670.t01 | Wine grape | nucleus | 50.38 | 47.52 |
| PGSC0003DMT400051788 | Potato | nucleus | 46.62 | 38.04 |
| Solyc06g083430.1.1 | Tomato | nucleus | 45.49 | 37.23 |
| GSMUA_Achr6P04170_001 | Banana | nucleus | 37.22 | 36.53 |
| CDY52087 | Canola | nucleus, plastid | 34.96 | 31.31 |
| KRH50980 | Soybean | nucleus | 13.91 | 31.09 |
| Bra015090.1-P | Field mustard | nucleus | 34.59 | 30.98 |
| CDX77381 | Canola | nucleus | 34.59 | 30.98 |
| CDY39785 | Canola | nucleus | 30.45 | 29.14 |
| KRH41794 | Soybean | nucleus | 33.83 | 27.69 |
| AT3G24860.1 | Thale cress | nucleus | 31.95 | 27.42 |
| Zm00001d052798_P001 | Maize | nucleus | 30.08 | 27.4 |
| Zm00001d031266_P001 | Maize | nucleus | 32.71 | 27.27 |
| Os08t0484700-01 | Rice | nucleus | 31.58 | 26.67 |
| KRH40215 | Soybean | nucleus | 31.95 | 26.4 |
| EES15479 | Sorghum | nucleus | 29.7 | 25.0 |
| TraesCS5B01G564200.1 | Wheat | nucleus | 26.69 | 23.05 |
| TraesCS5D01G550500.1 | Wheat | nucleus | 25.94 | 22.7 |
| TraesCS4A01G315300.1 | Wheat | nucleus | 25.19 | 21.75 |
| KRH01003 | Soybean | nucleus | 21.05 | 20.74 |
| KRH13365 | Soybean | nucleus | 23.31 | 18.56 |
| KRH20709 | Soybean | nucleus | 22.56 | 18.4 |
| KRH30077 | Soybean | nucleus | 22.93 | 17.89 |
| KRH62829 | Soybean | nucleus | 22.93 | 16.76 |
Protein Annotations
| EMBL:ACUP02010019 | EnsemblPlants:KRH07500 | EnsemblPlantsGene:GLYMA_16G093600 | EntrezGene:100810821 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF17 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:KRH07500 | ProteinID:KRH07500.1 |
| SEG:seg | UniParc:UPI000233E7A5 | UniProt:K7MG72 | MapMan:15.5.20 | : | : |
Description
hypothetical protein
Coordinates
chr16:-:15097779..15098840
Molecular Weight (calculated)
30958.8 Da
IEP (calculated)
7.239
GRAVY (calculated)
-0.906
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPPNDAAS TKKPQPIPWT HQETVHLIRA YQEKWYALKR GPLRHNQWEE VAVVVAARCG YDLAHPAKSA LQCRHKMEKL RQRHRAEKKQ QHTAAALRPG
101: AWQYNTLMDD LERGPLPISA LAPLDTFEEE DENNDDTIDD RNDYDGDGSF INIKSKSINC ILSERPVRMR SNKRGFLREH VVVKEEEENE NEDDDVLGLS
201: TEMRAFAERF IGMESLKMEM MKETERCRLE MEKKRIQMIL ETQRRIVDSI GRAFGSNKRI KITQQN
101: AWQYNTLMDD LERGPLPISA LAPLDTFEEE DENNDDTIDD RNDYDGDGSF INIKSKSINC ILSERPVRMR SNKRGFLREH VVVKEEEENE NEDDDVLGLS
201: TEMRAFAERF IGMESLKMEM MKETERCRLE MEKKRIQMIL ETQRRIVDSI GRAFGSNKRI KITQQN
001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.