Factsheet for VIT_07s0005g06670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g02090.t01
VIT_12s0028g02150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24860.1	VIT_12s0028g02150.t01	AT3G58630.1	21798944
AT3G24860.1	VIT_02s0025g02090.t01	AT4G10840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07500	Soybean	cytosol, mitochondrion, nucleus	47.52	50.38
KRH66081	Soybean	cytosol	45.74	46.07
PGSC0003DMT400051788	Potato	nucleus	52.13	45.09
Solyc06g083430.1.1	Tomato	nucleus	51.77	44.92
GSMUA_Achr6P04170_001	Banana	nucleus	40.07	41.7
Bra015090.1-P	Field mustard	nucleus	36.52	34.68
CDY52087	Canola	nucleus, plastid	36.52	34.68
CDX77381	Canola	nucleus	36.52	34.68
AT3G24860.1	Thale cress	nucleus	36.88	33.55
CDY39785	Canola	nucleus	32.98	33.45
Zm00001d052798_P001	Maize	nucleus	32.98	31.85
Zm00001d031266_P001	Maize	nucleus	35.11	31.03
Os08t0484700-01	Rice	nucleus	34.4	30.79
EES15479	Sorghum	nucleus	34.04	30.38
TraesCS5D01G550500.1	Wheat	nucleus	31.56	29.28
TraesCS4A01G315300.1	Wheat	nucleus	31.56	28.9
TraesCS5B01G564200.1	Wheat	nucleus	31.21	28.57
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	30.85	27.19
VIT_13s0084g00800.t01	Wine grape	nucleus	26.24	23.2
VIT_00s0204g00020.t01	Wine grape	nucleus	31.91	22.9

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250032	wikigene:100250032	MapMan:15.5.20	ProteinID:CCB60290	ProteinID:CCB60290.1
ncoils:Coil	UniProt:F6I024	EMBL:FN596502	InterPro:IPR006578	InterPro:IPR017877	EntrezGene:LOC100250032
wikigene:LOC100250032	InterPro:MADF-dom	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR31307
PANTHER:PTHR31307:SF17	SMART:SM00595	UniParc:UPI00015CBEAB	ArrayExpress:VIT_07s0005g06670	EnsemblPlantsGene:VIT_07s0005g06670	EnsemblPlants:VIT_07s0005g06670.t01
RefSeq:XP_002269137	RefSeq:XP_002269137.2	RefSeq:XP_010652521.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:12046991..12048073

Molecular Weight (calculated)

32355.6 Da

IEP (calculated)

9.782

GRAVY (calculated)

-0.857

Length

282 amino acids

Sequence
(BLAST)

001: MATPSPPPPS SSPPNRPKKA QPLPWSHQET THLIQAYQEK WYSLKRGQLK ASQWEEVAVT VAARCNYDEP SKSATQCRHK IEKLRKRYRA EKQRIVIGAA
101: ASSSWPYFHL MDSLERGPLP ISAQPMSVLK YEKAYPYSHN CKPNDDNVGN DDYSNSSNDE DSGALKTRSR SINYILQRPA VVNRFAVDPK LNWSTEQEET
201: GAVVVEGGKG VVWELAGEMR AFAERFVRME NMKMEMMKET ERRRMEMESR RMEMIVESQR KIVETIGRAL GSNKKLKMSQ EI

Best Arabidopsis Sequence Match ( AT3G24860.1 )
(BLAST)

001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.