Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g01300.t01 | Wine grape | nucleus | 48.7 | 55.96 |
| KRH27047 | Soybean | nucleus | 48.7 | 55.05 |
| KRH22283 | Soybean | nucleus | 47.26 | 53.59 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 40.06 | 53.46 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 38.04 | 53.44 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 37.75 | 51.98 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 40.35 | 51.85 |
| Solyc12g010890.1.1 | Tomato | nucleus | 45.24 | 48.61 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 35.16 | 47.84 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 33.14 | 45.28 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 36.89 | 43.69 |
| CDX98311 | Canola | nucleus | 39.19 | 43.59 |
| Bra003346.1-P | Field mustard | nucleus | 38.04 | 43.14 |
| CDX71939 | Canola | nucleus, plastid | 37.18 | 42.86 |
| CDX67755 | Canola | nucleus | 38.9 | 42.72 |
| AT3G58630.1 | Thale cress | nucleus | 39.19 | 42.37 |
| PGSC0003DMT400020194 | Potato | plastid | 45.24 | 40.99 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 42.36 | 37.03 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 44.38 | 35.9 |
| EES03423 | Sorghum | cytosol | 31.7 | 34.7 |
| Zm00001d011571_P001 | Maize | cytosol | 31.41 | 34.6 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 31.7 | 34.59 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 31.7 | 34.59 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 31.41 | 34.49 |
| Zm00001d043902_P001 | Maize | nucleus | 31.41 | 34.28 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 31.41 | 34.17 |
| Os05t0560600-01 | Rice | nucleus | 33.43 | 33.53 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 33.43 | 32.58 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 33.14 | 32.58 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 32.85 | 32.29 |
| EES18672 | Sorghum | nucleus | 32.28 | 32.28 |
| Zm00001d038994_P001 | Maize | cytosol | 31.7 | 32.07 |
| Os01t0674000-01 | Rice | nucleus | 29.68 | 31.02 |
| Zm00001d030350_P001 | Maize | nucleus | 18.44 | 30.48 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 31.41 | 29.95 |
| VIT_11s0016g04130.t01 | Wine grape | nucleus | 24.5 | 23.22 |
| VIT_09s0002g04700.t01 | Wine grape | nucleus | 23.34 | 19.19 |
Protein Annotations
| ArrayExpress:VIT_12s0028g02150 | EMBL:FN595235 | EnsemblPlants:VIT_12s0028g02150.t01 | EnsemblPlantsGene:VIT_12s0028g02150 | EntrezGene:100260870 | EntrezGene:LOC100260870 |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF2 | PFAM:PF13837 | ProteinID:CCB47367 | ProteinID:CCB47367.1 | RefSeq:XP_002280689 |
| RefSeq:XP_002280689.1 | SEG:seg | UniParc:UPI000210923A | UniProt:F6H4Z8 | wikigene:100260870 | wikigene:LOC100260870 |
| MapMan:15.5.20 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:2906944..2910682
Molecular Weight (calculated)
39134.9 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.547
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDGTGTPSP ATAPPRPLQP LACREDCWTE DATHTLIEAW GDRYLELNRG NLRQKHWQEV ADAVNALHGH LKKARRTDVQ CKNRIDTLKK KYKIEKSRVS
101: DSNGALTSQW PFYERLDALI GSNMPAKKPS PPVYRKTPPM LPPVPVGPRS VMHKRPAPVT ADESFRRNFS VVAAAAAAVE EVEEAESARS ESDGDGGREG
201: VKELAQAIVR FGEIYEKVEE SKQKQMIDLE VKRMQFARDL EIQRMKLFMD TQVQLEKIKH AKRSSGNELR IMKGLLIGGV GDEKKDHLIH LDKVSDQIEA
301: GFSCLGNVVT MNSVLTIHGL WRFTKALYSL APNCLEQEFF ILWDLSY
101: DSNGALTSQW PFYERLDALI GSNMPAKKPS PPVYRKTPPM LPPVPVGPRS VMHKRPAPVT ADESFRRNFS VVAAAAAAVE EVEEAESARS ESDGDGGREG
201: VKELAQAIVR FGEIYEKVEE SKQKQMIDLE VKRMQFARDL EIQRMKLFMD TQVQLEKIKH AKRSSGNELR IMKGLLIGGV GDEKKDHLIH LDKVSDQIEA
301: GFSCLGNVVT MNSVLTIHGL WRFTKALYSL APNCLEQEFF ILWDLSY
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.