Factsheet for VIT_09s0002g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0208g00020.t01
VIT_00s0270g00100.t01
VIT_00s0317g00140.t01
VIT_00s0426g00040.t01
VIT_00s0663g00030.t01
VIT_00s0726g00020.t01
VIT_00s0802g00020.t01
VIT_02s0025g00310.t01
VIT_02s0025g01660.t01
VIT_03s0063g00920.t01
VIT_03s0063g01900.t01
VIT_04s0008g05590.t01
VIT_05s0020g00180.t01
VIT_07s0005g06670.t01
VIT_08s0058g00530.t01
VIT_10s0405g00020.t01
VIT_12s0034g01440.t01
VIT_12s0055g00700.t01
VIT_13s0156g00270.t01
VIT_14s0006g01800.t01
VIT_14s0108g01230.t01
VIT_14s0219g00290.t01
VIT_15s0045g00110.t01
VIT_15s0046g00380.t01
VIT_15s0046g00390.t01
VIT_15s0046g00400.t01
VIT_15s0046g00410.t01
VIT_17s0000g01740.t01
VIT_17s0000g10370.t01
VIT_19s0090g01700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54060.1	VIT_03s0063g01900.t01	AT1G49410.1	21798944
AT1G54060.1	VIT_12s0034g01440.t01	AT1G57620.1	21798944
AT1G54060.1	VIT_12s0055g00700.t01	AT2G31490.1	21798944
AT1G54060.1	VIT_13s0156g00270.t01	AT2G32840.1	21798944
AT1G54060.1	VIT_00s0208g00020.t01	AT3G09630.1	21798944
AT1G54060.1	VIT_15s0045g00110.t01	AT3G09630.1	21798944
AT1G54060.1	VIT_03s0063g00920.t01	AT3G19120.1	21798944
AT1G54060.1	VIT_07s0005g06670.t01	AT3G24860.1	21798944
AT1G54060.1	VIT_14s0108g01230.t01	AT3G29160.1	21798944
AT1G54060.1	VIT_00s0426g00040.t01	AT3G61790.1	21798944
AT1G54060.1	VIT_00s0663g00030.t01	AT3G61790.1	21798944
AT1G54060.1	VIT_00s0726g00020.t01	AT3G61790.1	21798944
AT1G54060.1	VIT_02s0025g01660.t01	AT3G61790.1	21798944
AT1G54060.1	VIT_15s0046g00380.t01	AT3G61790.1	21798944
AT1G54060.1	VIT_15s0046g00390.t01	AT3G61790.1	21798944
AT1G54060.1	VIT_15s0046g00400.t01	AT3G61790.1	21798944
AT1G54060.1	VIT_15s0046g00410.t01	AT3G61790.1	21798944
AT1G54060.1	VIT_10s0405g00020.t01	AT4G17270.1	21798944
AT1G54060.1	VIT_04s0008g05590.t01	AT4G32260.1	21798944
AT1G54060.1	VIT_00s0208g00020.t01	AT5G02870.1	21798944
AT1G54060.1	VIT_15s0045g00110.t01	AT5G02870.1	21798944
AT1G54060.1	VIT_19s0090g01700.t01	AT5G16320.1	21798944
AT1G54060.1	VIT_14s0006g01800.t01	AT5G17450.1	21798944
AT1G54060.1	VIT_02s0025g00310.t01	AT5G41520.1	21798944
AT1G54060.1	VIT_17s0000g10370.t01	AT5G50335.1	21798944
AT1G54060.1	VIT_05s0020g00180.t01	AT5G60160.1	21798944
AT1G54060.1	VIT_17s0000g01740.t01	AT5G60160.1	21798944
AT1G54060.1	VIT_00s0270g00100.t01	AT5G62030.1	21798944
AT3G14180.1	VIT_14s0219g00290.t01	AT3G01690.1	21798944
AT3G14180.1	VIT_08s0058g00530.t01	AT3G08780.1	21798944
AT3G14180.1	VIT_00s0208g00020.t01	AT3G09630.1	21798944
AT3G14180.1	VIT_15s0045g00110.t01	AT3G09630.1	21798944
AT3G14180.1	VIT_00s0317g00140.t01	AT3G55150.1	21798944
AT3G14180.1	VIT_00s0802g00020.t01	AT5G67620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06239	Soybean	nucleus	68.41	67.3
Solyc03g122030.1.1	Tomato	nucleus	67.03	67.22
KRH47662	Soybean	nucleus, plastid	67.58	66.85
PGSC0003DMT400088401	Potato	nucleus, plastid	68.41	66.76
CDY33246	Canola	nucleus	42.31	50.33
CDY39099	Canola	nucleus	43.68	50.16
Bra021534.1-P	Field mustard	nucleus, plastid	42.31	49.68
CDX75751	Canola	nucleus	50.55	49.46
CDY39101	Canola	nucleus, plastid	41.21	49.18
Bra021536.1-P	Field mustard	nucleus	41.21	49.02
VIT_08s0058g00200.t01	Wine grape	nucleus	31.87	45.67
AT3G14180.1	Thale cress	nucleus	55.22	45.37
CDY61477	Canola	nucleus, plastid	36.54	44.19
Bra037960.1-P	Field mustard	nucleus, plastid	35.71	43.19
CDY02487	Canola	nucleus, plastid	35.44	41.88
Bra014370.1-P	Field mustard	nucleus	38.19	41.49
CDY08216	Canola	nucleus	37.36	41.46
CDY51405	Canola	nucleus	14.29	40.94
GSMUA_Achr8P23650_001	Banana	nucleus	37.64	40.18
AT1G54060.1	Thale cress	nucleus	41.76	39.69
Bra030909.1-P	Field mustard	nucleus	13.74	39.06
GSMUA_Achr9P14340_001	Banana	nucleus	38.74	38.95
CDY26148	Canola	nucleus, plastid	38.19	38.94
TraesCS2D01G311800.1	Wheat	nucleus, plastid	40.38	35.59
VIT_10s0003g01300.t01	Wine grape	nucleus	29.4	35.43
TraesCS2A01G313300.1	Wheat	nucleus, plastid	40.38	35.34
TraesCS2B01G332100.1	Wheat	nucleus, plastid	40.38	35.34
TraesCS6A01G198600.1	Wheat	nucleus, plastid	35.16	34.59
GSMUA_Achr3P05880_001	Banana	nucleus	38.19	34.41
Os04t0445600-00	Rice	nucleus	39.29	34.29
Zm00001d003549_P001	Maize	nucleus	36.26	34.29
Zm00001d025514_P001	Maize	nucleus	36.26	33.67
EES12241	Sorghum	nucleus	36.54	32.6
TraesCS6B01G230000.1	Wheat	nucleus	37.09	32.45
TraesCS6D01G184500.2	Wheat	nucleus	37.09	32.45
HORVU6Hr1G050140.1	Barley	nucleus, plastid	37.09	32.3
Os02t0565000-01	Rice	nucleus	36.81	31.98
VIT_12s0028g02150.t01	Wine grape	cytosol	29.95	31.41
Zm00001d016876_P001	Maize	nucleus, plastid	34.07	30.85
CDY33093	Canola	cytosol, plastid	35.16	29.29
KXG30464	Sorghum	nucleus, plastid	32.42	27.96
Zm00001d010753_P001	Maize	nucleus	25.0	27.74
VIT_11s0016g04130.t01	Wine grape	nucleus	25.0	24.86
HORVU2Hr1G077940.1	Barley	cytosol, nucleus, plastid	14.29	23.21
VIT_09s0002g04700.t01	Wine grape	nucleus	24.18	20.85
Zm00001d042917_P001	Maize	golgi, plasma membrane	26.92	14.76

Protein Annotations

ArrayExpress:VIT_09s0002g00720	EMBL:FN596494	EnsemblPlants:VIT_09s0002g00720.t01	EnsemblPlantsGene:VIT_09s0002g00720	EntrezGene:100241240	EntrezGene:LOC100241240
PANTHER:PTHR31307	PANTHER:PTHR31307:SF4	PFAM:PF13837	ProteinID:CCB59258	ProteinID:CCB59258.1	RefSeq:XP_003632758
RefSeq:XP_003632758.1	RefSeq:XP_010654396.1	SEG:seg	unigene:Vvi.11981	UniParc:UPI0001983F0D	UniProt:F6HXQ1
wikigene:100241240	wikigene:LOC100241240	MapMan:15.5.20	:	:	:

Description

No Description!

Coordinates

chr9:+:477078..478359

Molecular Weight (calculated)

39926.6 Da

IEP (calculated)

10.226

GRAVY (calculated)

-0.997

Length

364 amino acids

Sequence
(BLAST)

001: MEDDEEIQSH PSPDTGSPAS PRSNGRITVT VAAAPPPQNT LTLALPIQQA RTAGNGGGGG GGREDCWSEG ATSVLIDAWG ERYLELSRGN LKQKHWKDVA
101: DIVSSREDYT KTAKTDIQCK NRIDTVKKKY KLEKAKIAAG GGPSKWPFYQ RLDHLIGPTA KIASASPATA TPLPLQNVPL GIPVGMRSVH HQQPQQKNPK
201: QKQQLRRRAP VDSDSSQSEP EASPDSTDSF PPETFERKRP RMQRELNSNT PRSAPVRSRG GGGGGGGGGS AADKNWSNSV RELTQAILKF GEAYEQAETS
301: KLQQVADMER QRMKFAKELE LQRMQFFMKT QLEISQLNHG RRVGNNSIHR NNNNNNNNNS DSSN

Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)

001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN

Arabidopsis Description

ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.