Factsheet for VIT_03s0063g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 3
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00340.t01
VIT_06s0004g06590.t01
VIT_07s0005g06420.t01
VIT_09s0002g00720.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19120.1	VIT_01s0010g00340.t01	AT1G30860.1	21798944
AT3G19120.1	VIT_07s0005g06420.t01	AT3G07090.1	21798944
AT3G19120.1	VIT_09s0002g00720.t01	AT3G14180.1	21798944
AT3G19120.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT3G19120.1	VIT_06s0004g06590.t01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G19120.1	Thale cress	plastid	65.03	65.47
VIT_11s0118g00530.t01	Wine grape	cytosol	10.24	23.83
VIT_04s0008g01380.t01	Wine grape	nucleus	22.94	21.28
VIT_11s0016g01810.t01	Wine grape	nucleus	23.16	20.43
VIT_06s0004g04160.t01	Wine grape	nucleus	17.15	20.05
VIT_07s0151g00360.t01	Wine grape	cytosol	18.49	19.39
VIT_13s0019g00460.t01	Wine grape	plastid	16.26	18.91
VIT_03s0063g00150.t01	Wine grape	extracellular, vacuole	17.15	16.96

Protein Annotations

ArrayExpress:VIT_03s0063g00920	EMBL:FN596006	EnsemblPlants:VIT_03s0063g00920.t01	EnsemblPlantsGene:VIT_03s0063g00920	EntrezGene:100252086	EntrezGene:LOC100252086
InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF109	PFAM:PF13359	ProteinID:CCB56901	ProteinID:CCB56901.1
RefSeq:XP_002285007	RefSeq:XP_002285007.1	SEG:seg	unigene:Vvi.12051	UniParc:UPI0001982F1E	UniProt:F6HQE4
wikigene:100252086	wikigene:LOC100252086	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3:+:4360028..4361863

Molecular Weight (calculated)

49411.9 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.085

Length

449 amino acids

Sequence
(BLAST)

001: MDQSFLLMLS NLLHLHNHLD PTTTSLLSDT STATTTATTS PTSPTSLLSS TSAAPLLFFT IASVLSYVAS SRPSSSSSTS AAAAAAAPNP ATTSSTSDYS
101: VSAFRALSTE HIWAMEAPLR DAQWRSLYGL SYPVFTTVVD KLKPYIALSN LSLPSDYAVA MVLSRLSHGF SAKTLSSRYS LEPYLISKIT NMVTRLLATK
201: LYPEFIKIPV SRRRLHETTQ AFEELTSLPN MCGAIDGSPV KIRNNSASSY RCRYGFQSVL LQVVADHKKI FWDVCVKAPG GTDDATHLRD SLLYNRLTSG
301: DIVWDKVINV RNHHVRPYIV GDWCYPLLSF LLTPFSPSGS GTSGQNLFDA ALMKGRSVVV EAIGLLKGRW RILQDLNVGM NHAPQTIVAC CVLHNLCQIA
401: REPEPDLWKE PEESGPPPRV LESEKSDYFF SDNLRQTLAD DLHQRLSSR

Best Arabidopsis Sequence Match ( AT3G19120.1 )
(BLAST)

001: MEEAFMAMLS HLLHLQNSLD PTSTLFSSAS TSSQSSTTPS SLLSTSSAAP LLFFTLASLL SFLAVNRSST ESSSSSESPS PSPPPPLADG DYSVAAFRAL
101: TTDHIWSLDA PLRDARWRSL YGLSYPVFIT VVDKLKPFIT ASNLSLPADY AVAMVLSRLA HGCSAKTLAS RYSLDPYLIS KITNMVTRLL ATKLYPEFIK
201: IPVGKRRLIE TTQGFEELTS LPNICGAIDS TPVKLRRRTK LNPRNIYGCK YGYDAVLLQV VADHKKIFWD VCVKAPGGED DSSHFRDSLL YKRLTSGDIV
301: WEKVINIRGH HVRPYIVGDW CYPLLSFLMT PFSPNGSGTP PENLFDGMLM KGRSVVVEAI GLLKARWKIL QSLNVGVNHA PQTIVACCVL HNLCQIAREP
401: EPEIWKDPDE AGTPARVLES ERQFYYYGES LRQALAEDLH QRLSSR

Arabidopsis Description

At3g19120/MVI11_3 [Source:UniProtKB/TrEMBL;Acc:Q9LJL8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.