Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078858 | Potato | nucleus | 63.21 | 27.11 |
| Solyc07g007360.1.1 | Tomato | cytosol, mitochondrion, nucleus | 62.18 | 26.91 |
| AT1G72275.1 | Thale cress | cytosol | 47.15 | 21.46 |
| TraesCS2A01G518800.1 | Wheat | plastid | 45.6 | 19.91 |
| TraesCS2B01G547100.1 | Wheat | mitochondrion | 45.08 | 19.82 |
| TraesCS2D01G520200.1 | Wheat | mitochondrion | 44.04 | 19.36 |
| Zm00001d026435_P001 | Maize | plastid | 43.01 | 18.82 |
| Os04t0644200-00 | Rice | mitochondrion | 45.6 | 16.09 |
| VIT_06s0004g04160.t01 | Wine grape | nucleus | 27.98 | 14.06 |
| VIT_13s0019g00460.t01 | Wine grape | plastid | 25.91 | 12.95 |
| VIT_04s0008g01380.t01 | Wine grape | nucleus | 28.5 | 11.36 |
| VIT_07s0151g00360.t01 | Wine grape | cytosol | 24.87 | 11.21 |
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 27.46 | 10.41 |
| VIT_03s0063g00150.t01 | Wine grape | extracellular, vacuole | 24.35 | 10.35 |
| VIT_03s0063g00920.t01 | Wine grape | plastid | 23.83 | 10.24 |
| Bra013151.1-P | Field mustard | plastid | 2.07 | 1.69 |
| CDX93109 | Canola | plastid | 2.07 | 1.68 |
Protein Annotations
| ArrayExpress:VIT_11s0118g00530 | EMBL:FN595515 | EnsemblPlants:VIT_11s0118g00530.t01 | EnsemblPlantsGene:VIT_11s0118g00530 | EntrezGene:100854497 | EntrezGene:LOC100854497 |
| InterPro:HARBI1_dom | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF87 | PFAM:PF13359 | ProteinID:CCB49925 | ProteinID:CCB49925.1 |
| RefSeq:XP_003633150 | RefSeq:XP_003633150.1 | SEG:seg | UniParc:UPI0002108D67 | UniProt:F6HCH9 | wikigene:100854497 |
| wikigene:LOC100854497 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:6317262..6317843
Molecular Weight (calculated)
21614.9 Da
IEP (calculated)
5.304
GRAVY (calculated)
-0.115
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQALVDSEG RFLDVSAGWS SKLKPDTILH QSALFSGVDE SRELLNGPPF ELTDGNLIPQ YILGDSCLPL LPWLLTPYVR SSEEDSLSSS EQAFNFVHSR
101: GMGLVSTAFC RVRARWQLLA KLWKEECIEF FPFVIVTGCL LHNFLIKCSE PLPDENAGRS KEGELPIYQG KMNESGQRIR DALASHLSRV SLR
101: GMGLVSTAFC RVRARWQLLA KLWKEECIEF FPFVIVTGCL LHNFLIKCSE PLPDENAGRS KEGELPIYQG KMNESGQRIR DALASHLSRV SLR
001: MVAGKRKSDR NPTNVSDKLG LKDPLLRRLS SAAAVTNSFL QANDLFLSPS QTLRLESLIS SLPISPSPSS SSSAITTTTW FNRFLTSATE DEDDPRWCLY
101: FRMSKSTFFS LYSILSHSSL PSFAATIFRL AHGASYECLV HRFGFDSTSQ ASRSFFTVCK LINEKLSQQL DDPKPDFSPN LLPNCYGVVG FGRFEVKGKL
201: LGAKGSILVQ ALVDSNGRFV DISAGWPSTM KPEAIFRQTK LFSIAEEVLS GAPTKLGNGV LVPRYILGDS CLPLLPWLVT PYDLTSDEES FREEFNNVVH
301: TGLHSVEIAF AKVRARWRIL DKKWKPETIE FMPFVITTGC LLHNFLVNSG DDDDSVEECV NGCEAGDNGE MRKDDDKEEE TRSFEGEAYR ESKRIRDAIA
401: ENLSRVSSLR
101: FRMSKSTFFS LYSILSHSSL PSFAATIFRL AHGASYECLV HRFGFDSTSQ ASRSFFTVCK LINEKLSQQL DDPKPDFSPN LLPNCYGVVG FGRFEVKGKL
201: LGAKGSILVQ ALVDSNGRFV DISAGWPSTM KPEAIFRQTK LFSIAEEVLS GAPTKLGNGV LVPRYILGDS CLPLLPWLVT PYDLTSDEES FREEFNNVVH
301: TGLHSVEIAF AKVRARWRIL DKKWKPETIE FMPFVITTGC LLHNFLVNSG DDDDSVEECV NGCEAGDNGE MRKDDDKEEE TRSFEGEAYR ESKRIRDAIA
401: ENLSRVSSLR
Arabidopsis Description
LOW protein: nuclease-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AMV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.