Factsheet for VIT_06s0004g04160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g073090.1.1	Tomato	cytosol	57.03	66.57
Os11t0702700-01	Rice	mitochondrion	55.99	54.99
Zm00001d048620_P001	Maize	mitochondrion	54.95	54.1
VIT_13s0019g00460.t01	Wine grape	plastid	53.65	53.37
Zm00001d006850_P001	Maize	cytosol	28.12	52.17
TraesCS3B01G389300.1	Wheat	mitochondrion	53.12	51.65
Zm00001d005463_P001	Maize	cytosol	22.14	51.52
Os01t0838900-01	Rice	cytosol, mitochondrion	52.86	51.26
TraesCS3D01G350500.1	Wheat	mitochondrion	52.86	51.26
TraesCS3A01G356500.1	Wheat	mitochondrion	52.34	50.76
HORVU6Hr1G009940.1	Barley	cytosol	34.11	42.26
VIT_07s0151g00360.t01	Wine grape	cytosol	46.88	42.06
HORVU6Hr1G010180.1	Barley	cytosol	33.07	42.05
HORVU6Hr1G003140.1	Barley	cytosol	19.01	41.01
Zm00001d038377_P002	Maize	nucleus	46.88	40.27
HORVU6Hr1G010140.1	Barley	cytosol	35.16	40.06
HORVU7Hr1G122380.2	Barley	cytosol	31.25	37.74
VIT_11s0118g00530.t01	Wine grape	cytosol	14.06	27.98
VIT_04s0008g01380.t01	Wine grape	nucleus	25.52	20.25
VIT_03s0063g00150.t01	Wine grape	extracellular, vacuole	22.66	19.16
VIT_11s0016g01810.t01	Wine grape	nucleus	24.22	18.27
VIT_03s0063g00920.t01	Wine grape	plastid	20.05	17.15

Protein Annotations

ArrayExpress:VIT_06s0004g04160	EMBL:FN594951	EnsemblPlants:VIT_06s0004g04160.t01	EnsemblPlantsGene:VIT_06s0004g04160	EntrezGene:100250208	EntrezGene:LOC100250208
InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF110	PFAM:PF13359	ProteinID:CBI16187	ProteinID:CBI16187.3
RefSeq:XP_002281425	RefSeq:XP_002281425.1	RefSeq:XP_010651057.1	SEG:seg	UniParc:UPI000198365D	UniProt:D7SKK9
wikigene:100250208	wikigene:LOC100250208	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:+:5127606..5135216

Molecular Weight (calculated)

43849.8 Da

IEP (calculated)

7.523

GRAVY (calculated)

-0.379

Length

384 amino acids

Sequence
(BLAST)

001: MGPVRGYKKR RKIEKREESS EEGSVDWWDE FSKRIAGLLS SSKGLDKFES VFKISRKTFN YICALVKEDM MAKPGNFIFT NGRPMCLNDQ VAVALRRLSS
101: GDSLLTIGDA FGLNHSTVSQ VTWRFVEIME ERALHHLQWP STEPEITEIT SKFEKIRGLP NCCGAIDTTH IMMCLPSADS ANSVWLDSEN HHSMILQAIV
201: DPEMRFRDIV TGWPGKMKDS SVLQSSNFFK LCEKGQRLNG KKIELAEGSE ISEYIVGDSG YPLLPWLVTP YQGKELSESK AEFNRRHFAT RMVAQRALAR
301: LKEMWKVIQG VMWRPDKNRL PRIILVCCLL HNIVIDLEDE VQDEMPLSHH HDLGYRQQIC ESADNNASIV RDKLSLYLSG RLPP

Best Arabidopsis Sequence Match ( AT3G55350.1 )
(BLAST)

001: MGPIKTIKKK KRAEKKVDRN VLLAATAAAT SASAAAALNN NDDDDDSSSQ SLDWWDGFSR RIYGGSTDPK TFESVFKISR KTFDYICSLV KADFTAKPAN
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA

Arabidopsis Description

Protein ALP1-like [Source:UniProtKB/Swiss-Prot;Acc:Q9M2U3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.