Factsheet for Solyc11g073090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04160.t01	Wine grape	nucleus	66.57	57.03
Zm00001d006850_P001	Maize	cytosol	31.61	50.24
Solyc05g054670.2.1	Tomato	cytosol	59.57	49.62
Zm00001d048620_P001	Maize	mitochondrion	56.84	47.95
Os11t0702700-01	Rice	mitochondrion	56.84	47.83
Zm00001d005463_P001	Maize	cytosol	23.4	46.67
Os01t0838900-01	Rice	cytosol, mitochondrion	50.76	42.17
TraesCS3D01G350500.1	Wheat	mitochondrion	49.24	40.91
TraesCS3B01G389300.1	Wheat	mitochondrion	48.94	40.76
HORVU6Hr1G009940.1	Barley	cytosol	38.3	40.65
TraesCS3A01G356500.1	Wheat	mitochondrion	48.33	40.15
Solyc06g084150.2.1	Tomato	cytosol	41.03	36.78
HORVU6Hr1G003140.1	Barley	cytosol	19.76	36.52
Zm00001d038377_P002	Maize	nucleus	48.94	36.02
HORVU6Hr1G010180.1	Barley	cytosol	32.22	35.1
HORVU7Hr1G122380.2	Barley	cytosol	32.22	33.33
HORVU6Hr1G010140.1	Barley	cytosol	33.74	32.94
Solyc08g062680.1.1	Tomato	cytosol	13.37	28.03
Solyc07g007360.1.1	Tomato	cytosol, mitochondrion, nucleus	25.23	18.61
Solyc12g009000.1.1	Tomato	cytosol	26.44	17.98
Solyc07g040960.1.1	Tomato	cytosol	26.14	17.23
Solyc01g107920.2.1	Tomato	extracellular, plasma membrane	19.45	15.46

Protein Annotations

EnsemblPlants:Solyc11g073090.1.1	EnsemblPlantsGene:Solyc11g073090.1	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF110	PFAM:PF13359
UniParc:UPI0002769FCF	UniProt:K4DB15	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr11:-:56190340..56191329

Molecular Weight (calculated)

37417.0 Da

IEP (calculated)

6.830

GRAVY (calculated)

-0.348

Length

329 amino acids

Sequence
(BLAST)

001: MSRRTFDYIC SLAEEHMQAK SAHYVFSSGK PMSLHEQVAL AMRRLSSGNS LISVGDSFGA HHSTVSQVTW RFIEAIEEKG LHHIRWPSTE EDMTAIKSKF
101: ERIQGLPNCC GAIDATHITM MLSSSEQTAD VWLDQNKNHS MVLQAVVDPD MRFRDVVTGL PGKLNENSVL QSSTLFKLCE KGERLNGNKM KLSEETELRE
201: YIVGDSGYAL LPWLLTPYQD KELSESKADF NKRHLATRIV AQRALARLKD VWKMIHGMMW RPDKHKLPRF ILVCCILHNI VIDMEDDVLD ELPLSSHLHD
301: PGYRQEVCES VDKTASVLRD NLSLHLSGR

Best Arabidopsis Sequence Match ( AT3G55350.1 )
(BLAST)

001: MGPIKTIKKK KRAEKKVDRN VLLAATAAAT SASAAAALNN NDDDDDSSSQ SLDWWDGFSR RIYGGSTDPK TFESVFKISR KTFDYICSLV KADFTAKPAN
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA

Arabidopsis Description

Protein ALP1-like [Source:UniProtKB/Swiss-Prot;Acc:Q9M2U3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.