Factsheet for Solyc12g009000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000875	Potato	cytosol	76.86	83.41
Solyc08g062680.1.1	Tomato	cytosol	23.14	71.34
Solyc07g040960.1.1	Tomato	cytosol	61.57	59.72
Os05t0593000-01	Rice	cytosol, nucleus, plastid	47.52	54.37
GSMUA_Achr6P00850_001	Banana	nucleus	42.56	53.93
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	50.0	53.66
VIT_11s0016g01810.t01	Wine grape	nucleus	55.17	52.46
TraesCS1A01G441100.1	Wheat	cytosol	48.14	50.43
TraesCS1D01G449600.1	Wheat	cytosol	48.14	49.57
TraesCS1B01G475800.1	Wheat	cytosol, nucleus, plastid	48.14	49.47
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	34.5	49.26
GSMUA_Achr5P22180_001	Banana	nucleus	33.47	49.09
Os01t0186900-02	Rice	cytosol	45.45	48.57
Zm00001d039524_P001	Maize	cytosol	45.87	47.03
TraesCS3D01G212000.1	Wheat	cytosol, mitochondrion, nucleus	51.65	46.99
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	51.45	46.72
TraesCS3B01G239400.1	Wheat	cytosol	51.03	46.6
GSMUA_Achr7P24010_001	Banana	nucleus	47.73	46.48
Os01t0582600-01	Rice	nucleus	52.27	45.92
TraesCS1B01G141100.1	Wheat	cytosol, extracellular, peroxisome	42.98	43.88
TraesCS1A01G121900.1	Wheat	cytosol, extracellular, plasma membrane	42.98	43.51
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	42.98	43.51
Zm00001d044300_P001	Maize	cytosol	50.62	43.13
AT4G29780.1	Thale cress	cytosol	47.11	42.22
TraesCS3D01G318900.1	Wheat	cytosol	37.4	41.04
Os05t0183900-00	Rice	cytosol	38.84	38.92
Os05t0184901-01	Rice	cytosol, endoplasmic reticulum, peroxisome	37.6	38.89
Zm00001d010344_P001	Maize	cytosol	38.02	38.74
Zm00001d010356_P001	Maize	nucleus	37.81	38.36
TraesCS3A01G110000.1	Wheat	cytosol	39.05	36.56
TraesCS3B01G129100.1	Wheat	cytosol	38.64	35.28
TraesCS3D01G111700.2	Wheat	cytosol	37.6	33.96
TraesCS3D01G111900.1	Wheat	cytosol	36.98	33.03
Os05t0184500-00	Rice	cytosol	23.35	31.92
Solyc11g073090.1.1	Tomato	cytosol	17.98	26.44
Zm00001d010347_P001	Maize	nucleus, plastid	16.74	26.21
Solyc05g054670.2.1	Tomato	cytosol	20.45	25.06
Solyc06g084150.2.1	Tomato	cytosol	18.59	24.52
Solyc01g107920.2.1	Tomato	extracellular, plasma membrane	17.77	20.77
Solyc07g007360.1.1	Tomato	cytosol, mitochondrion, nucleus	16.12	17.49

Protein Annotations

EnsemblPlants:Solyc12g009000.1.1	EnsemblPlantsGene:Solyc12g009000.1	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113	PFAM:PF13359
SEG:seg	UniParc:UPI00027696E1	UniProt:K4DBY8	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr12:+:2301084..2302538

Molecular Weight (calculated)

55511.1 Da

IEP (calculated)

6.762

GRAVY (calculated)

-0.450

Length

484 amino acids

Sequence
(BLAST)

001: MEITSFSSSF PSQEDFNSLN FFQELDFLSP SSDHHHHQSM SKKIKINDFD HNPVEEILNK FLGVENETHP ESKSVENHTL FDYKNQKFDF DHGVVSGTKR
101: VRENANENED GLVEVISGSG SGSGYSQQPL QQRRLWVKNR SNAWWEQCNR PDFPEEEFKK AFHMGKATFD FICSEIESVV TKKDTMLRMA IPVRQRVAVC
201: IWRLATGEPL REVSRRFGLG ISTCHKLVLE VCTAIRGVLM AKFIQWPDEL KMEEIKHEFE ILSGIENVGG SMYTTHVPII APKESVASYF NKRHTERNQK
301: TSYSVTVQGV VDPKGIFTDV CIGWPGSMTD DQVLEKSILY ERANRGNLNG TYIVGSSGFP LTDWILVPFT HQNVTWTQHA FNEKVNDVQR VAKEAFMRLK
401: ARWSCLKKRT EVKLQDLPVV LGACCTLHNI CEIRGEELRQ ELRFDLVDDE MIPEVVVRSM NAMKVRDQIA HKLLHHNHSG TSFL

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.