Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0186900-02 | Rice | cytosol | 62.29 | 64.9 |
| Solyc08g062680.1.1 | Tomato | cytosol | 18.86 | 56.69 |
| Zm00001d009746_P001 | Maize | cytosol, nucleus, plastid | 52.54 | 54.99 |
| GSMUA_Achr5P22180_001 | Banana | nucleus | 36.86 | 52.73 |
| GSMUA_Achr6P00850_001 | Banana | nucleus | 41.95 | 51.83 |
| GSMUA_Achr6P04860_001 | Banana | cytosol, nucleus, plastid | 36.86 | 51.33 |
| PGSC0003DMT400000875 | Potato | cytosol | 47.88 | 50.67 |
| PGSC0003DMT400027828 | Potato | cytosol | 52.12 | 48.62 |
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 52.12 | 48.33 |
| Solyc07g040960.1.1 | Tomato | cytosol | 50.42 | 47.7 |
| Zm00001d010356_P001 | Maize | nucleus | 47.67 | 47.17 |
| Zm00001d044300_P001 | Maize | cytosol | 56.57 | 47.01 |
| Zm00001d010344_P001 | Maize | cytosol | 47.03 | 46.74 |
| Solyc12g009000.1.1 | Tomato | cytosol | 47.03 | 45.87 |
| AT4G29780.1 | Thale cress | cytosol | 48.73 | 42.59 |
| Zm00001d010347_P001 | Maize | nucleus, plastid | 20.97 | 32.04 |
| Zm00001d006850_P001 | Maize | cytosol | 11.65 | 26.57 |
| Zm00001d048620_P001 | Maize | mitochondrion | 19.49 | 23.59 |
| Zm00001d018916_P001 | Maize | cytosol | 19.49 | 22.72 |
| Zm00001d038377_P002 | Maize | nucleus | 20.76 | 21.92 |
| Zm00001d005463_P001 | Maize | cytosol | 7.63 | 21.82 |
| Zm00001d045208_P001 | Maize | endoplasmic reticulum, vacuole | 17.37 | 21.47 |
| Zm00001d026435_P001 | Maize | plastid | 19.7 | 21.09 |
Protein Annotations
| EnsemblPlants:Zm00001d039524_P001 | EnsemblPlants:Zm00001d039524_T001 | EnsemblPlantsGene:Zm00001d039524 | InterPro:HARBI1_dom | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF81 |
| PFAM:PF13359 | ProteinID:ONM29053.1 | SEG:seg | UniParc:UPI000160B773 | UniProt:A0A1D6MHZ5 | MapMan:35.1 |
Description
Transposon protein CACTA%2C En/Spm sub-class
Coordinates
chr3:-:7085192..7086610
Molecular Weight (calculated)
50918.2 Da
IEP (calculated)
7.098
GRAVY (calculated)
-0.202
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSYTEAQF GSLLDLPAGD DLTSWFTHLC GEEQAAALPA FQAPVAMADP RKRSAEYQLL EGEASGVKRQ RSPTSSSREN SAGSNDGDYE HTSAAAAAAA
101: AGGGGGGRGG GRRLWVKERD HEWWDRMSSP ACPDDEFRRA FRMSRATFEA VCEELGAAVA KEDTMLRAAI PVRQRVAVCI WRLATGEPLR LVSKRFGLGI
201: STCHKLVLEV CAAIKAVLMP KAVQWPEAPD AAAAESARFE AASGIPGVVG AMYTTHIPII APKANVAAYY NRRHTERNQK TSYSITVQGV VDAGGAFTDV
301: CIGWPGSMSD ADVLDRSALY LQRGAAGLLQ GQRLVGGAGY PLMDWLLVPY THHNMTWAQH VFNERVDGVR AVARDAFQRL KSRWGCLQKR TEVKLQDLPV
401: VLGACCVLHN ICERAGDAVD PDIAFQLFDD DMVAENPVRS TAAVAARDNI AHNLLHRSSS SSAAAGPRFA FN
101: AGGGGGGRGG GRRLWVKERD HEWWDRMSSP ACPDDEFRRA FRMSRATFEA VCEELGAAVA KEDTMLRAAI PVRQRVAVCI WRLATGEPLR LVSKRFGLGI
201: STCHKLVLEV CAAIKAVLMP KAVQWPEAPD AAAAESARFE AASGIPGVVG AMYTTHIPII APKANVAAYY NRRHTERNQK TSYSITVQGV VDAGGAFTDV
301: CIGWPGSMSD ADVLDRSALY LQRGAAGLLQ GQRLVGGAGY PLMDWLLVPY THHNMTWAQH VFNERVDGVR AVARDAFQRL KSRWGCLQKR TEVKLQDLPV
401: VLGACCVLHN ICERAGDAVD PDIAFQLFDD DMVAENPVRS TAAVAARDNI AHNLLHRSSS SSAAAGPRFA FN
001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
Arabidopsis Description
AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.