Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P22180_001 | Banana | nucleus | 67.85 | 69.7 |
| GSMUA_Achr6P00850_001 | Banana | nucleus | 65.49 | 58.12 |
| Solyc08g062680.1.1 | Tomato | cytosol | 22.71 | 49.04 |
| Os05t0593000-01 | Rice | cytosol, nucleus, plastid | 53.39 | 42.79 |
| Zm00001d009746_P001 | Maize | cytosol, nucleus, plastid | 53.98 | 40.58 |
| GSMUA_Achr7P24010_001 | Banana | nucleus | 59.29 | 40.44 |
| TraesCS1A01G441100.1 | Wheat | cytosol | 51.33 | 37.66 |
| TraesCS1B01G475800.1 | Wheat | cytosol, nucleus, plastid | 51.62 | 37.16 |
| PGSC0003DMT400000875 | Potato | cytosol | 48.67 | 37.0 |
| Zm00001d039524_P001 | Maize | cytosol | 51.33 | 36.86 |
| TraesCS1D01G449600.1 | Wheat | cytosol | 51.03 | 36.81 |
| Os01t0186900-02 | Rice | cytosol | 48.97 | 36.64 |
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 52.8 | 35.17 |
| TraesCS3B01G239400.1 | Wheat | cytosol | 54.28 | 34.72 |
| Os05t0184901-01 | Rice | cytosol, endoplasmic reticulum, peroxisome | 47.79 | 34.62 |
| Solyc12g009000.1.1 | Tomato | cytosol | 49.26 | 34.5 |
| Solyc07g040960.1.1 | Tomato | cytosol | 50.44 | 34.27 |
| TraesCS3D01G212000.1 | Wheat | cytosol, mitochondrion, nucleus | 53.69 | 34.21 |
| TraesCS1B01G141100.1 | Wheat | cytosol, extracellular, peroxisome | 47.79 | 34.18 |
| TraesCS3A01G209100.1 | Wheat | cytosol, nucleus, plastid | 53.69 | 34.15 |
| TraesCS1A01G121900.1 | Wheat | cytosol, extracellular, plasma membrane | 48.08 | 34.1 |
| TraesCS1D01G122700.1 | Wheat | cytosol, extracellular, peroxisome | 47.49 | 33.68 |
| Os01t0582600-01 | Rice | nucleus | 54.57 | 33.58 |
| PGSC0003DMT400027828 | Potato | cytosol | 49.85 | 33.4 |
| Zm00001d044300_P001 | Maize | cytosol | 54.87 | 32.75 |
| Zm00001d010356_P001 | Maize | nucleus | 44.54 | 31.66 |
| Zm00001d010344_P001 | Maize | cytosol | 44.25 | 31.58 |
| Os05t0183900-00 | Rice | cytosol | 43.07 | 30.23 |
| TraesCS3D01G318900.1 | Wheat | cytosol | 38.64 | 29.71 |
| AT4G29780.1 | Thale cress | cytosol | 47.2 | 29.63 |
| TraesCS3B01G129100.1 | Wheat | cytosol | 40.41 | 25.85 |
| TraesCS3A01G110000.1 | Wheat | cytosol | 39.23 | 25.73 |
| TraesCS3D01G111900.1 | Wheat | cytosol | 40.12 | 25.09 |
| TraesCS3D01G111700.2 | Wheat | cytosol | 38.35 | 24.25 |
| Os05t0184500-00 | Rice | cytosol | 23.6 | 22.6 |
| Zm00001d010347_P001 | Maize | nucleus, plastid | 18.88 | 20.71 |
| GSMUA_Achr9P00980_001 | Banana | endoplasmic reticulum, plasma membrane | 17.4 | 14.11 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P04860_001 | EnsemblPlants:GSMUA_Achr6T04860_001 | EnsemblPlantsGene:GSMUA_Achr6G04860_001 | InterPro:HARBI1_dom | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF113 |
| PFAM:PF13359 | SEG:seg | UniParc:UPI0002964764 | UniProt:M0T484 | MapMan:35.1 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G04860_001]
Coordinates
chr6:+:3308698..3310363
Molecular Weight (calculated)
37623.2 Da
IEP (calculated)
5.628
GRAVY (calculated)
-0.369
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MTANQTPARF PSPATAFDDD LFSYYFSFFH DTAAASDPQP SSALPSPMEP NPNKRPREDD LSPSRLVALK PSSSSSSPPP VDDDAAEQEE AQAVPPTVQP
101: GHRRLWVKDR SSDWWDYYNH PDLPEDEFRR AFRMCRATFD FLCDELGSAV AKEDTALRAA IPVRQRVAVC VWRLATGEPL RLVSRRFGLG ISTCHKLVLE
201: ALSGIPNVTS YTVTIQGVVD PDGVFTDVCI GWPGSMPDDQ VLEKSALFER ANSGLLNNQW LVGGGSYPLL DWVLVPYAQT NLTWAQHAFN EKIGEVQRVA
301: KEAFARLKGR WGCLQKRAEN RDSIAHNLLH HGLAGTAFL
101: GHRRLWVKDR SSDWWDYYNH PDLPEDEFRR AFRMCRATFD FLCDELGSAV AKEDTALRAA IPVRQRVAVC VWRLATGEPL RLVSRRFGLG ISTCHKLVLE
201: ALSGIPNVTS YTVTIQGVVD PDGVFTDVCI GWPGSMPDDQ VLEKSALFER ANSGLLNNQW LVGGGSYPLL DWVLVPYAQT NLTWAQHAFN EKIGEVQRVA
301: KEAFARLKGR WGCLQKRAEN RDSIAHNLLH HGLAGTAFL
001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
Arabidopsis Description
AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.