Factsheet for TraesCS3D01G212000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G239400.1	Wheat	cytosol	93.98	94.34
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	93.8	93.62
Os01t0582600-01	Rice	nucleus	77.07	74.41
Zm00001d044300_P001	Maize	cytosol	71.62	67.08
Solyc08g062680.1.1	Tomato	cytosol	19.74	66.88
TraesCS1D01G449600.1	Wheat	cytosol	53.01	60.0
PGSC0003DMT400000875	Potato	cytosol	48.12	57.4
VIT_11s0016g01810.t01	Wine grape	nucleus	54.51	56.97
GSMUA_Achr6P00850_001	Banana	nucleus	39.85	55.5
GSMUA_Achr5P22180_001	Banana	nucleus	33.65	54.24
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	34.21	53.69
PGSC0003DMT400027828	Potato	cytosol	50.56	53.16
Solyc07g040960.1.1	Tomato	cytosol	48.5	51.7
Solyc12g009000.1.1	Tomato	cytosol	46.99	51.65
AT4G29780.1	Thale cress	cytosol	47.93	47.22
TraesCS3D01G318900.1	Wheat	cytosol	37.22	44.9
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	40.23	44.77
TraesCS3D01G111900.1	Wheat	cytosol	38.91	38.19
TraesCS3D01G111700.2	Wheat	cytosol	37.22	36.94
TraesCS3D01G350500.1	Wheat	mitochondrion	19.74	26.52
TraesCS2D01G520200.1	Wheat	mitochondrion	16.73	20.27
TraesCS7D01G124800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	13.91	19.32

Protein Annotations

EnsemblPlants:TraesCS3D01G212000.1	EnsemblPlantsGene:TraesCS3D01G212000	InterPro:HARBI1_dom	ncoils:Coil	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113
PFAM:PF13359	SEG:seg	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3D:+:283675806..283677448

Molecular Weight (calculated)

58108.9 Da

IEP (calculated)

7.318

GRAVY (calculated)

-0.277

Length

532 amino acids

Sequence
(BLAST)

001: MRSPSGARPS SGGGAAADDD FAFYYSFFQD AAAASPLPLA LDGAAMPNNR RRKRGVDDDS AAAPIKDGSN NGRKRSIATI ITSLAALEAE GHADSAGAAD
101: ASRRELALLE SNADNKSQAM MDYFAKMEGS FDADADSEAA ARSKRSRLSA SAAAVAVVAG EEAATNTAAS ASPPRAGHHQ RRLWVKDRSQ AWWDQCNSPD
201: FPEAEFRRAF RMGRETFDMI CEALGSAVAK EDTMLRAAIP VRQRVAVCIW RLATGEPLRL VSKRFGLGIS TCHKLVLEVC GAIKSVLMPR FLQWPDEAAA
301: GRFKEGFERS FGVPGVIGAM YTTHIPIIAP KISVAAYFNR RHTERNQKTS YSITLQGVVG PDRAFTDVCI GWPGSMPDDQ VLEKSMLHQR AAAGMMHDAC
401: LVGGASYPLM DWVLVPYTHQ NLTWTQHAFN EKVGDIRNVA VEAFARLKTR WACLQKRTEV KLQDLPVVLG ACCVLHNICE MRREELEPEV PFALVDDDTT
501: PETPVRSETA KQERDSIAHN LLHRGFAGTT FF

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.