Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 51.67 | 54.81 |
| AT5G12010.1 | Thale cress | cytosol | 49.81 | 53.59 |
| PGSC0003DMT400000875 | Potato | cytosol | 43.33 | 52.47 |
| Os05t0593000-01 | Rice | cytosol, nucleus, plastid | 40.93 | 52.25 |
| TraesCS1B01G475800.1 | Wheat | cytosol, nucleus, plastid | 44.81 | 51.38 |
| TraesCS1A01G441100.1 | Wheat | cytosol | 43.7 | 51.08 |
| TraesCS1D01G449600.1 | Wheat | cytosol | 44.44 | 51.06 |
| Zm00001d009746_P001 | Maize | cytosol, nucleus, plastid | 41.85 | 50.11 |
| GSMUA_Achr6P00850_001 | Banana | nucleus | 34.81 | 49.21 |
| Zm00001d039524_P001 | Maize | cytosol | 42.59 | 48.73 |
| Os01t0186900-02 | Rice | cytosol | 40.56 | 48.34 |
| PGSC0003DMT400027828 | Potato | cytosol | 45.19 | 48.22 |
| TraesCS3A01G209100.1 | Wheat | cytosol, nucleus, plastid | 47.59 | 48.22 |
| TraesCS3B01G239400.1 | Wheat | cytosol | 47.22 | 48.11 |
| Solyc07g040960.1.1 | Tomato | cytosol | 44.44 | 48.1 |
| TraesCS3D01G212000.1 | Wheat | cytosol, mitochondrion, nucleus | 47.22 | 47.93 |
| GSMUA_Achr5P22180_001 | Banana | nucleus | 29.07 | 47.58 |
| GSMUA_Achr6P04860_001 | Banana | cytosol, nucleus, plastid | 29.63 | 47.2 |
| Solyc12g009000.1.1 | Tomato | cytosol | 42.22 | 47.11 |
| GSMUA_Achr7P24010_001 | Banana | nucleus | 42.78 | 46.48 |
| Os01t0582600-01 | Rice | nucleus | 47.04 | 46.1 |
| Zm00001d044300_P001 | Maize | cytosol | 46.85 | 44.54 |
| TraesCS1D01G122700.1 | Wheat | cytosol, extracellular, peroxisome | 37.78 | 42.68 |
| TraesCS1A01G121900.1 | Wheat | cytosol, extracellular, plasma membrane | 37.78 | 42.68 |
| TraesCS1B01G141100.1 | Wheat | cytosol, extracellular, peroxisome | 36.48 | 41.56 |
| Zm00001d010344_P001 | Maize | cytosol | 33.7 | 38.32 |
| Os05t0184901-01 | Rice | cytosol, endoplasmic reticulum, peroxisome | 32.96 | 38.03 |
| Zm00001d010356_P001 | Maize | nucleus | 33.52 | 37.95 |
| TraesCS3D01G318900.1 | Wheat | cytosol | 30.74 | 37.64 |
| TraesCS3A01G110000.1 | Wheat | cytosol | 33.52 | 35.01 |
| Os05t0183900-00 | Rice | cytosol | 31.3 | 34.99 |
| TraesCS3B01G129100.1 | Wheat | cytosol | 33.89 | 34.53 |
| TraesCS3D01G111900.1 | Wheat | cytosol | 34.26 | 34.13 |
| TraesCS3D01G111700.2 | Wheat | cytosol | 33.15 | 33.4 |
| Zm00001d010347_P001 | Maize | nucleus, plastid | 16.11 | 28.16 |
| Os05t0184500-00 | Rice | cytosol | 18.15 | 27.68 |
| AT3G55350.1 | Thale cress | nucleus | 19.44 | 25.86 |
| AT3G63270.1 | Thale cress | cytosol | 17.41 | 23.74 |
| AT3G19120.1 | Thale cress | plastid | 16.67 | 20.18 |
| AT1G72275.1 | Thale cress | cytosol | 15.19 | 19.34 |
Protein Annotations
| MapMan:35.1 | EntrezGene:829100 | ProteinID:AEE85675.1 | ArrayExpress:AT4G29780 | EnsemblPlantsGene:AT4G29780 | RefSeq:AT4G29780 |
| TAIR:AT4G29780 | RefSeq:AT4G29780-TAIR-G | EnsemblPlants:AT4G29780.1 | TAIR:AT4G29780.1 | EMBL:BT002922 | EMBL:BT005724 |
| InterPro:HARBI1_dom | RefSeq:NP_567834.2 | PFAM:PF13359 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF113 | UniProt:Q84J48 |
| UniParc:UPI000000BE3E | SEG:seg | : | : | : | : |
Description
Nuclease [Source:UniProtKB/TrEMBL;Acc:Q84J48]
Coordinates
chr4:+:14579563..14582057
Molecular Weight (calculated)
60122.2 Da
IEP (calculated)
7.376
GRAVY (calculated)
-0.430
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISSFPFPY LQDDECSHFL GLFQDMDSSP STFGLEGFNS NDNNTNQKKR PRKDDEGGGG GGGGTEVLGA VNGNNKAAFG DILATLLLLD EEAKQQQEQW
101: DFEFIKEKSL LEANHKKKVK TMDGYYNQMQ DHYSAAGETD GSRSKRARKT AVAAVVSAVA SGADTTGLAA PVPTADIASG SGSGPSHRRL WVKERTTDWW
201: DRVSRPDFPE DEFRREFRMS KSTFNLICEE LDTTVTKKNT MLRDAIPAPK RVGVCVWRLA TGAPLRHVSE RFGLGISTCH KLVIEVCRAI YDVLMPKYLL
301: WPSDSEINST KAKFESVHKI PNVVGSIYTT HIPIIAPKVH VAAYFNKRHT ERNQKTSYSI TVQGVVNADG IFTDVCIGNP GSLTDDQILE KSSLSRQRAA
401: RGMLRDSWIV GNSGFPLTDY LLVPYTRQNL TWTQHAFNES IGEIQGIATA AFERLKGRWA CLQKRTEVKL QDLPYVLGAC CVLHNICEMR KEEMLPELKF
501: EVFDDVAVPE NNIRSASAVN TRDHISHNLL HRGLAGTRTL
101: DFEFIKEKSL LEANHKKKVK TMDGYYNQMQ DHYSAAGETD GSRSKRARKT AVAAVVSAVA SGADTTGLAA PVPTADIASG SGSGPSHRRL WVKERTTDWW
201: DRVSRPDFPE DEFRREFRMS KSTFNLICEE LDTTVTKKNT MLRDAIPAPK RVGVCVWRLA TGAPLRHVSE RFGLGISTCH KLVIEVCRAI YDVLMPKYLL
301: WPSDSEINST KAKFESVHKI PNVVGSIYTT HIPIIAPKVH VAAYFNKRHT ERNQKTSYSI TVQGVVNADG IFTDVCIGNP GSLTDDQILE KSSLSRQRAA
401: RGMLRDSWIV GNSGFPLTDY LLVPYTRQNL TWTQHAFNES IGEIQGIATA AFERLKGRWA CLQKRTEVKL QDLPYVLGAC CVLHNICEMR KEEMLPELKF
501: EVFDDVAVPE NNIRSASAVN TRDHISHNLL HRGLAGTRTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.