Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- extracellular 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93109 | Canola | plastid | 29.48 | 52.52 |
| Bra013151.1-P | Field mustard | plastid | 26.89 | 48.31 |
| VIT_11s0118g00530.t01 | Wine grape | cytosol | 21.46 | 47.15 |
| PGSC0003DMT400078858 | Potato | nucleus | 33.49 | 31.56 |
| Zm00001d026435_P001 | Maize | plastid | 32.31 | 31.07 |
| Solyc07g007360.1.1 | Tomato | cytosol, mitochondrion, nucleus | 32.55 | 30.94 |
| TraesCS2A01G518800.1 | Wheat | plastid | 29.95 | 28.73 |
| TraesCS2D01G520200.1 | Wheat | mitochondrion | 29.48 | 28.47 |
| TraesCS2B01G547100.1 | Wheat | mitochondrion | 29.01 | 28.02 |
| Os04t0644200-00 | Rice | mitochondrion | 31.84 | 24.68 |
| AT3G19120.1 | Thale cress | plastid | 21.93 | 20.85 |
| AT3G55350.1 | Thale cress | nucleus | 19.81 | 20.69 |
| AT3G63270.1 | Thale cress | cytosol | 18.63 | 19.95 |
| AT5G12010.1 | Thale cress | cytosol | 18.87 | 15.94 |
| AT4G29780.1 | Thale cress | cytosol | 19.34 | 15.19 |
Protein Annotations
| ArrayExpress:AT1G72275 | EnsemblPlants:AT1G72275.1 | EnsemblPlantsGene:AT1G72275 | EntrezGene:28717417 | InterPro:HARBI1_dom | PANTHER:PTHR22930 |
| PANTHER:PTHR22930:SF87 | PFAM:PF13359 | ProteinID:ANM57972.1 | RefSeq:NP_001320443.1 | SEG:seg | UniParc:UPI0008486EF9 |
| UniProt:A0A1P8AMV0 | MapMan:35.1 | : | : | : | : |
Description
LOW protein: nuclease-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AMV0]
Coordinates
chr1:-:27209404..27211179
Molecular Weight (calculated)
47168.9 Da
IEP (calculated)
6.410
GRAVY (calculated)
-0.250
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAGKRKSDR NPTNVSDKLG LKDPLLRRLS SAAAVTNSFL QANDLFLSPS QTLRLESLIS SLPISPSPSS SSSAITTTTW FNRFLTSATE DEDDPRWCLY
101: FRMSKSTFFS LYSILSHSSL PSFAATIFRL AHGASYECLV HRFGFDSTSQ ASRSFFTVCK LINEKLSQQL DDPKPDFSPN LLPNCYGVVG FGRFEVKGKL
201: LGAKGSILVQ ALVDSNGRFV DISAGWPSTM KPEAIFRQTK LFSIAEEVLS GAPTKLGNGV LVPRYILGDS CLPLLPWLVT PYDLTSDEES FREEFNNVVH
301: TGLHSVEIAF AKVRARWRIL DKKWKPETIE FMPFVITTGC LLHNFLVNSG DDDDSVEECV NGCEAGDNGE MRKDDDKEEE TRSFEGEAYR ESKRIRDAIA
401: ENLSRVHMAQ SQKVSARPIV RALG
101: FRMSKSTFFS LYSILSHSSL PSFAATIFRL AHGASYECLV HRFGFDSTSQ ASRSFFTVCK LINEKLSQQL DDPKPDFSPN LLPNCYGVVG FGRFEVKGKL
201: LGAKGSILVQ ALVDSNGRFV DISAGWPSTM KPEAIFRQTK LFSIAEEVLS GAPTKLGNGV LVPRYILGDS CLPLLPWLVT PYDLTSDEES FREEFNNVVH
301: TGLHSVEIAF AKVRARWRIL DKKWKPETIE FMPFVITTGC LLHNFLVNSG DDDDSVEECV NGCEAGDNGE MRKDDDKEEE TRSFEGEAYR ESKRIRDAIA
401: ENLSRVHMAQ SQKVSARPIV RALG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.