Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g007360.1.1 | Tomato | cytosol, mitochondrion, nucleus | 82.67 | 83.41 |
| VIT_11s0118g00530.t01 | Wine grape | cytosol | 27.11 | 63.21 |
| TraesCS2B01G547100.1 | Wheat | mitochondrion | 36.67 | 37.59 |
| TraesCS2A01G518800.1 | Wheat | plastid | 36.44 | 37.1 |
| TraesCS2D01G520200.1 | Wheat | mitochondrion | 35.33 | 36.22 |
| Zm00001d026435_P001 | Maize | plastid | 34.67 | 35.37 |
| AT1G72275.1 | Thale cress | cytosol | 31.56 | 33.49 |
| Os04t0644200-00 | Rice | mitochondrion | 36.22 | 29.8 |
| Bra013151.1-P | Field mustard | plastid | 14.67 | 27.97 |
| CDX93109 | Canola | plastid | 13.78 | 26.05 |
| PGSC0003DMT400066745 | Potato | endoplasmic reticulum, plasma membrane | 18.67 | 19.81 |
| PGSC0003DMT400000875 | Potato | cytosol | 18.67 | 18.83 |
| PGSC0003DMT400027828 | Potato | cytosol | 18.89 | 16.8 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078858 | EnsemblPlantsGene:PGSC0003DMG400030690 | EntrezGene:102584333 | InterPro:HARBI1_dom | ncoils:Coil | PANTHER:PTHR22930 |
| PANTHER:PTHR22930:SF87 | PFAM:PF13359 | PGSC:PGSC0003DMG400030690 | RefSeq:XP_006359511.1 | SEG:seg | UniParc:UPI0002952C01 |
| UniProt:M1D0U9 | MapMan:35.1 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030690]
Coordinates
chr7:-:3323392..3325139
Molecular Weight (calculated)
50190.6 Da
IEP (calculated)
8.606
GRAVY (calculated)
-0.114
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAGRKRGR KKKKKKIKTM TKKITKLTKK FKATLQLRHQ HCTKLIPHLI AAISSAHSFL LRHDLHLLPH QSLSLESLIS SSSSSISNIV SLLSLPPPPP
101: RAAPPPRAAV TSPSDDDSLP GCWFQRFLIA DSDTLWAETF NLTEPSFTLL LRLLTPSLSS LSVPPNYALA LTLYRLAHGA SFSAVSRRFG IDSPTACRVF
201: YTVCKAITEN LGHLFELKSD INRVIVGFGW ISLPNCCGVL GIEKFELGGD LLGENGFLTV QALVDSEGRF LDVSAGWPST MRPETVLRKS KLYLGVEESK
301: EYLNGSSFEL NDGNSIPQYI LGDSCFPLLP WVLTPYRGES NVEDGAEMAF NSVHRRGMQL VGTAFGRVRE KWKLLARKWN EQCIEAFPFV IVTCCLLHNF
401: LIKCSEAVTD ETEEYPRFEE FPVFDGEVDE SGKKIRDALA SHLFRVSQRE
101: RAAPPPRAAV TSPSDDDSLP GCWFQRFLIA DSDTLWAETF NLTEPSFTLL LRLLTPSLSS LSVPPNYALA LTLYRLAHGA SFSAVSRRFG IDSPTACRVF
201: YTVCKAITEN LGHLFELKSD INRVIVGFGW ISLPNCCGVL GIEKFELGGD LLGENGFLTV QALVDSEGRF LDVSAGWPST MRPETVLRKS KLYLGVEESK
301: EYLNGSSFEL NDGNSIPQYI LGDSCFPLLP WVLTPYRGES NVEDGAEMAF NSVHRRGMQL VGTAFGRVRE KWKLLARKWN EQCIEAFPFV IVTCCLLHNF
401: LIKCSEAVTD ETEEYPRFEE FPVFDGEVDE SGKKIRDALA SHLFRVSQRE
001: MVAGKRKSDR NPTNVSDKLG LKDPLLRRLS SAAAVTNSFL QANDLFLSPS QTLRLESLIS SLPISPSPSS SSSAITTTTW FNRFLTSATE DEDDPRWCLY
101: FRMSKSTFFS LYSILSHSSL PSFAATIFRL AHGASYECLV HRFGFDSTSQ ASRSFFTVCK LINEKLSQQL DDPKPDFSPN LLPNCYGVVG FGRFEVKGKL
201: LGAKGSILVQ ALVDSNGRFV DISAGWPSTM KPEAIFRQTK LFSIAEEVLS GAPTKLGNGV LVPRYILGDS CLPLLPWLVT PYDLTSDEES FREEFNNVVH
301: TGLHSVEIAF AKVRARWRIL DKKWKPETIE FMPFVITTGC LLHNFLVNSG DDDDSVEECV NGCEAGDNGE MRKDDDKEEE TRSFEGEAYR ESKRIRDAIA
401: ENLSRVSSLR
101: FRMSKSTFFS LYSILSHSSL PSFAATIFRL AHGASYECLV HRFGFDSTSQ ASRSFFTVCK LINEKLSQQL DDPKPDFSPN LLPNCYGVVG FGRFEVKGKL
201: LGAKGSILVQ ALVDSNGRFV DISAGWPSTM KPEAIFRQTK LFSIAEEVLS GAPTKLGNGV LVPRYILGDS CLPLLPWLVT PYDLTSDEES FREEFNNVVH
301: TGLHSVEIAF AKVRARWRIL DKKWKPETIE FMPFVITTGC LLHNFLVNSG DDDDSVEECV NGCEAGDNGE MRKDDDKEEE TRSFEGEAYR ESKRIRDAIA
401: ENLSRVSSLR
Arabidopsis Description
LOW protein: nuclease-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AMV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.