Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g107920.2.1 | Tomato | extracellular, plasma membrane | 75.71 | 77.54 |
| VIT_03s0063g00150.t01 | Wine grape | extracellular, vacuole | 46.23 | 43.17 |
| GSMUA_Achr9P00980_001 | Banana | endoplasmic reticulum, plasma membrane | 37.74 | 38.28 |
| TraesCS7B01G026400.1 | Wheat | endoplasmic reticulum, plasma membrane | 27.12 | 29.49 |
| Zm00001d045208_P001 | Maize | endoplasmic reticulum, vacuole | 26.18 | 29.06 |
| TraesCS7D01G124800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 25.94 | 28.72 |
| Os06t0164500-00 | Rice | mitochondrion | 24.76 | 24.08 |
| PGSC0003DMT400078858 | Potato | nucleus | 19.81 | 18.67 |
| PGSC0003DMT400000875 | Potato | cytosol | 19.34 | 18.39 |
| PGSC0003DMT400027828 | Potato | cytosol | 17.92 | 15.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400066745 | EnsemblPlantsGene:PGSC0003DMG400025940 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:HARBI1_dom |
| PANTHER:PTHR22930 | PANTHER:PTHR22930:SF121 | PFAM:PF13359 | PGSC:PGSC0003DMG400025940 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0002958466 | UniProt:M1CG42 | MapMan:35.1 | : | : |
Description
Zgc:113227 [Source:PGSC_GENE;Acc:PGSC0003DMG400025940]
Coordinates
chr1:-:84276765..84278385
Molecular Weight (calculated)
46964.5 Da
IEP (calculated)
7.453
GRAVY (calculated)
0.069
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPRNLAAML SSLIAQLLLL ITVIFPSSNP LSITNSSLSD FLTPLLLHFL SVSETSATLS LIPFSRCKRK RIHFSESDAP AGEGLTRFKL GRPDSFIRRN
101: PDCFKKFFNI NSSTFDWLCG LLEPLLECRD PVDSPLNLAA ETRLGIGLFR LATGANFSDI SRRFSVSESV AKFCFKQLCR VLCTNFRFWV GFLNSGELES
201: VSNRFESISG IPNCCGVLCC VRFKVNEESI AAQLVVDSSS RIISIIAGFR GDKTDFQVLN SSTLFQDIEK GTIFRNSKGM EINGVVVPQF LVGNGDYPLL
301: NWLMLPFDDP VSQSNEENFN NAINVMRLPS VIAVQSLRNW GVLREPIEGE IKTVVASIGA CSILHNMLLS RDDYSAFCED LNDYSSDKCK SSLNLGESKS
401: VACSIRSALV TKVTKATEFQ SQKQ
101: PDCFKKFFNI NSSTFDWLCG LLEPLLECRD PVDSPLNLAA ETRLGIGLFR LATGANFSDI SRRFSVSESV AKFCFKQLCR VLCTNFRFWV GFLNSGELES
201: VSNRFESISG IPNCCGVLCC VRFKVNEESI AAQLVVDSSS RIISIIAGFR GDKTDFQVLN SSTLFQDIEK GTIFRNSKGM EINGVVVPQF LVGNGDYPLL
301: NWLMLPFDDP VSQSNEENFN NAINVMRLPS VIAVQSLRNW GVLREPIEGE IKTVVASIGA CSILHNMLLS RDDYSAFCED LNDYSSDKCK SSLNLGESKS
401: VACSIRSALV TKVTKATEFQ SQKQ
001: MAPVKQKKKN KKKPLDKAKK LAKNKEKKRV NAVPLDPEAI DCDWWDTFWL RNSSPSVPSD EDYAFKHFFR ASKTTFSYIC SLVREDLISR PPSGLINIEG
101: RLLSVEKQVA IALRRLASGD SQVSVGAAFG VGQSTVSQVT WRFIEALEER AKHHLRWPDS DRIEEIKSKF EEMYGLPNCC GAIDTTHIIM TLPAVQASDD
201: WCDQEKNYSM FLQGVFDHEM RFLNMVTGWP GGMTVSKLLK FSGFFKLCEN AQILDGNPKT LSQGAQIREY VVGGISYPLL PWLITPHDSD HPSDSMVAFN
301: ERHEKVRSVA ATAFQQLKGS WRILSKVMWR PDRRKLPSII LVCCLLHNII IDCGDYLQED VPLSGHHDSG YADRYCKQTE PLGSELRGCL TEHLLR
101: RLLSVEKQVA IALRRLASGD SQVSVGAAFG VGQSTVSQVT WRFIEALEER AKHHLRWPDS DRIEEIKSKF EEMYGLPNCC GAIDTTHIIM TLPAVQASDD
201: WCDQEKNYSM FLQGVFDHEM RFLNMVTGWP GGMTVSKLLK FSGFFKLCEN AQILDGNPKT LSQGAQIREY VVGGISYPLL PWLITPHDSD HPSDSMVAFN
301: ERHEKVRSVA ATAFQQLKGS WRILSKVMWR PDRRKLPSII LVCCLLHNII IDCGDYLQED VPLSGHHDSG YADRYCKQTE PLGSELRGCL TEHLLR
Arabidopsis Description
ALP1Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94K49]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.