Factsheet for PGSC0003DMT400027828

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g040960.1.1	Tomato	cytosol	81.42	82.57
PGSC0003DMT400000875	Potato	cytosol	60.08	68.16
Os05t0593000-01	Rice	cytosol, nucleus, plastid	48.22	57.68
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	51.19	57.43
VIT_11s0016g01810.t01	Wine grape	nucleus	56.72	56.39
GSMUA_Achr6P00850_001	Banana	nucleus	41.3	54.71
TraesCS1A01G441100.1	Wheat	cytosol	48.22	52.81
Zm00001d039524_P001	Maize	cytosol	48.62	52.12
Os01t0186900-02	Rice	cytosol	46.64	52.1
TraesCS1D01G449600.1	Wheat	cytosol	48.02	51.7
TraesCS1B01G475800.1	Wheat	cytosol, nucleus, plastid	48.02	51.59
GSMUA_Achr5P22180_001	Banana	nucleus	33.4	51.21
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	53.36	50.66
TraesCS3B01G239400.1	Wheat	cytosol	52.96	50.57
TraesCS3D01G212000.1	Wheat	cytosol, mitochondrion, nucleus	53.16	50.56
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	33.4	49.85
Os01t0582600-01	Rice	nucleus	54.15	49.73
GSMUA_Achr7P24010_001	Banana	nucleus	48.42	49.3
Zm00001d044300_P001	Maize	cytosol	51.98	46.3
AT4G29780.1	Thale cress	cytosol	48.22	45.19
TraesCS3D01G318900.1	Wheat	cytosol	38.14	43.76
TraesCS1A01G121900.1	Wheat	cytosol, extracellular, plasma membrane	40.91	43.31
TraesCS1B01G141100.1	Wheat	cytosol, extracellular, peroxisome	40.51	43.25
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	40.71	43.1
Os05t0184901-01	Rice	cytosol, endoplasmic reticulum, peroxisome	38.34	41.45
Zm00001d010344_P001	Maize	cytosol	37.75	40.21
Os05t0183900-00	Rice	cytosol	37.75	39.54
Zm00001d010356_P001	Maize	nucleus	37.15	39.41
TraesCS3B01G129100.1	Wheat	cytosol	37.75	36.04
TraesCS3A01G110000.1	Wheat	cytosol	36.76	35.98
TraesCS3D01G111700.2	Wheat	cytosol	35.18	33.21
TraesCS3D01G111900.1	Wheat	cytosol	35.18	32.84
Os05t0184500-00	Rice	cytosol	21.54	30.79
Zm00001d010347_P001	Maize	nucleus, plastid	15.81	25.89
PGSC0003DMT400078858	Potato	nucleus	16.8	18.89
PGSC0003DMT400066745	Potato	endoplasmic reticulum, plasma membrane	15.02	17.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400027828	EnsemblPlantsGene:PGSC0003DMG400010713	EntrezGene:102590956	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113
PFAM:PF13359	PGSC:PGSC0003DMG400010713	RefSeq:XP_006342328.1	SEG:seg	UniParc:UPI0002961E79	UniProt:M1AQ80
MapMan:35.1	:	:	:	:	:

Description

Salt responsive protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400010713]

Coordinates

chr7:+:36903263..36905080

Molecular Weight (calculated)

58086.2 Da

IEP (calculated)

6.436

GRAVY (calculated)

-0.498

Length

506 amino acids

Sequence
(BLAST)

001: MEISSFLFPN QEDYPSPNFF SFFQDFDFPA TTDTTAAAAA PIAAEPLPKK RRVDDFDFDL EQVVEQGSLK SVEDILNKFL GFDKEEDKTE LKLDWSSQEQ
101: FANQSVFDFS NQQSGLIMNE KVKPMAGTNN KRSRQNSAEF IPTSEEESQP QQQRRLWVKD RSKAWWEQCN SPDFPEEEFK KAFRMTRATF DMICEELESV
201: VTKKDTMLRQ AIPVRQRVAV CIWRLATGEP LREVSKRFGL GISTCHKLVL EVCTAIKGVL MPKFVQWPND DYKMNEIKHE FQMLSGMPNV GGSIYTTHVP
301: IIAPKVSVAA YFNKRHTERN QKTSYSVTVQ GVVDPKGVFT DVCIGWPGSM SDDKVLEKSA LYQRANRGQL KDTWVVGNSG YPLMDWVLAP YTRQNLTWTQ
401: HAFNEKVGEV QKVAKEAFMR MKARWSCLRK RTEVKLQDLP VVLGACCVLH NICEMRGEQL NPELRFDLFD DEMVPENIVR SMNAVQARDQ IAHQLLHQNH
501: AGTNFL

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.