Factsheet for Zm00001d009746_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0593000-01	Rice	cytosol, nucleus, plastid	64.97	69.27
Solyc08g062680.1.1	Tomato	cytosol	22.39	64.33
TraesCS1A01G441100.1	Wheat	cytosol	64.75	63.2
TraesCS1B01G475800.1	Wheat	cytosol, nucleus, plastid	64.75	62.0
TraesCS1D01G449600.1	Wheat	cytosol	64.08	61.49
GSMUA_Achr6P00850_001	Banana	nucleus	47.67	56.28
PGSC0003DMT400000875	Potato	cytosol	54.55	55.16
GSMUA_Achr5P22180_001	Banana	nucleus	39.69	54.24
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	40.58	53.98
Zm00001d039524_P001	Maize	cytosol	54.99	52.54
Zm00001d044300_P001	Maize	cytosol	65.19	51.76
PGSC0003DMT400027828	Potato	cytosol	57.43	51.19
Solyc07g040960.1.1	Tomato	cytosol	56.54	51.1
Solyc12g009000.1.1	Tomato	cytosol	53.66	50.0
VIT_11s0016g01810.t01	Wine grape	nucleus	55.43	49.12
AT4G29780.1	Thale cress	cytosol	50.11	41.85
Zm00001d010356_P001	Maize	nucleus	43.46	41.09
Zm00001d010344_P001	Maize	cytosol	43.24	41.05
Zm00001d010347_P001	Maize	nucleus, plastid	20.18	29.45
Zm00001d005463_P001	Maize	cytosol	9.31	25.45
Zm00001d006850_P001	Maize	cytosol	11.53	25.12
Zm00001d048620_P001	Maize	mitochondrion	20.18	23.33
Zm00001d038377_P002	Maize	nucleus	22.39	22.6
Zm00001d026435_P001	Maize	plastid	21.06	21.54
Zm00001d018916_P001	Maize	cytosol	19.29	21.48
Zm00001d045208_P001	Maize	endoplasmic reticulum, vacuole	15.74	18.59

Protein Annotations

EMBL:EU956728	EnsemblPlants:Zm00001d009746_P001	EnsemblPlants:Zm00001d009746_T001	EnsemblPlantsGene:Zm00001d009746	EntrezGene:100275559	InterPro:HARBI1_dom
PANTHER:PTHR22930	PANTHER:PTHR22930:SF117	PFAM:PF13359	ProteinID:AQK92561.1	SEG:seg	UniParc:UPI000182B6DA
UniProt:B6SVG3	MapMan:35.1	:	:	:	:

Description

PIF / Ping-Pong family of plant transposases

Coordinates

chr8:+:79189766..79191121

Molecular Weight (calculated)

49053.2 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.327

Length

451 amino acids

Sequence
(BLAST)

001: MPKPATANRR RKRGGGGGEG GAADEQASSK RRPATSVLTS LDVNDAPRPE LPLFQLSRPR QQAEQDDEEE EVTGGGGGGG AGSSLSSVVN GHGQSPHQQR
101: RLWVKDRSRA WWEQCSSADY PEADFRSAFR MGRATFAMLC DALGAAVAKE DTALRAAIPV RQRVAVCVWR LATGEPLRLV SKRFGLGIST CHKLVLEVCA
201: AIRGLLMPRF LRWPDDAAAE AFKSRFQAES GIPSVVGAIY TTHIPIIAPK VSVTAYFNRR HTERNHKTSY SITLQGVVDP DGAFTDVCIG WPGSMPDDQV
301: LERSALQQRA AAGMMAGSWV VGGVSFPLTE WVLAPYAQAN LTWAQHAFNE KVAEVRRVAV DAFARLKGRW ACLQKRTEVK LQDLPVVLGA CCVLHNICES
401: RGEGMDPALR CDIDDDETVP ENPVRSDGAT KARDDIAHNL LHSGRAGTKF F

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.