Factsheet for TraesCS1B01G475800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G449600.1	Wheat	cytosol	97.03	97.23
TraesCS1A01G441100.1	Wheat	cytosol	93.63	95.45
Os05t0593000-01	Rice	cytosol, nucleus, plastid	58.81	65.48
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	62.0	64.75
Solyc08g062680.1.1	Tomato	cytosol	21.02	63.06
TraesCS3B01G239400.1	Wheat	cytosol	60.93	54.15
GSMUA_Achr6P00850_001	Banana	nucleus	43.74	53.93
PGSC0003DMT400000875	Potato	cytosol	50.32	53.14
GSMUA_Achr5P22180_001	Banana	nucleus	36.31	51.82
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	37.16	51.62
VIT_11s0016g01810.t01	Wine grape	nucleus	53.5	49.51
Solyc12g009000.1.1	Tomato	cytosol	49.47	48.14
PGSC0003DMT400027828	Potato	cytosol	51.59	48.02
Solyc07g040960.1.1	Tomato	cytosol	49.68	46.89
AT4G29780.1	Thale cress	cytosol	51.38	44.81
TraesCS1B01G141100.1	Wheat	cytosol, extracellular, peroxisome	44.59	44.3
TraesCS3B01G129100.1	Wheat	cytosol	45.65	40.57
TraesCS3B01G389300.1	Wheat	mitochondrion	22.08	26.33
TraesCS2B01G258800.1	Wheat	cytosol	20.59	21.27
TraesCS2B01G547100.1	Wheat	mitochondrion	18.26	19.59
TraesCS7B01G026400.1	Wheat	endoplasmic reticulum, plasma membrane	15.92	19.23

Protein Annotations

EnsemblPlants:TraesCS1B01G475800.1	EnsemblPlantsGene:TraesCS1B01G475800	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113	PFAM:PF13359
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:684097079..684098494

Molecular Weight (calculated)

51059.2 Da

IEP (calculated)

8.414

GRAVY (calculated)

-0.172

Length

471 amino acids

Sequence
(BLAST)

001: MPNRRRKREP DDGGGAAAAA GAGGAGTDES KRHLDLRITN ILAEYHAPRP ARRALPLLEL NGRLLAEEDE EGEAEVVSPL TAPAPALPVV VVDGRPSKRR
101: VVAGGGGGGG DEASPYQRRL WVKDRSSEWW ELRSSPGYPE AEFLREFRMG RATFGMVCDA LGAAVAKEDT ALRAAIPVRQ RVAVCVWRLA TGEPLRLVSK
201: RFGIGISTCH KLVLEVCAAI RSILMPRFLR WPDRGSAAAA AVKASFEASS GVPDVVGAMY TTHIPIIAPK VHVASYFNRR HTERNQKTSY SITLQGVVGP
301: DAAFTDVCIG WPGSLADDQV LDKSALQQRA AAGMMEGSWV VGGASYPLTD WCLVPYTHQN LTWTQHAFNE KVADLRGVAV DAFSRLKSRW ACLQKRTEVK
401: LQDLPVVLGA CCVLHNICEA RGEAMPPELR VEVEDDLAVL DNPVRSDAAA KARDKIAHNL LHRGLAGTAF F

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.