Factsheet for PGSC0003DMT400000875

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009000.1.1	Tomato	cytosol	83.41	76.86
PGSC0003DMT400027828	Potato	cytosol	68.16	60.08
Os05t0593000-01	Rice	cytosol, nucleus, plastid	52.02	54.85
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	55.16	54.55
VIT_11s0016g01810.t01	Wine grape	nucleus	60.99	53.44
GSMUA_Achr6P00850_001	Banana	nucleus	45.07	52.62
TraesCS1A01G441100.1	Wheat	cytosol	53.14	51.3
TraesCS1B01G475800.1	Wheat	cytosol, nucleus, plastid	53.14	50.32
TraesCS1D01G449600.1	Wheat	cytosol	52.69	50.0
GSMUA_Achr5P22180_001	Banana	nucleus	36.32	49.09
Os01t0186900-02	Rice	cytosol	49.78	49.01
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	37.0	48.67
TraesCS3D01G212000.1	Wheat	cytosol, mitochondrion, nucleus	57.4	48.12
Zm00001d039524_P001	Maize	cytosol	50.67	47.88
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	57.17	47.84
TraesCS3B01G239400.1	Wheat	cytosol	56.05	47.17
Os01t0582600-01	Rice	nucleus	57.62	46.64
GSMUA_Achr7P24010_001	Banana	nucleus	51.57	46.28
AT4G29780.1	Thale cress	cytosol	52.47	43.33
Zm00001d044300_P001	Maize	cytosol	54.93	43.13
TraesCS1B01G141100.1	Wheat	cytosol, extracellular, peroxisome	44.62	41.98
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	44.39	41.42
TraesCS1A01G121900.1	Wheat	cytosol, extracellular, plasma membrane	44.39	41.42
TraesCS3D01G318900.1	Wheat	cytosol	40.36	40.82
Os05t0184901-01	Rice	cytosol, endoplasmic reticulum, peroxisome	41.03	39.1
Zm00001d010356_P001	Maize	nucleus	41.03	38.36
Zm00001d010344_P001	Maize	cytosol	40.81	38.32
Os05t0183900-00	Rice	cytosol	40.81	37.68
TraesCS3A01G110000.1	Wheat	cytosol	42.38	36.56
TraesCS3B01G129100.1	Wheat	cytosol	42.38	35.66
TraesCS3D01G111700.2	Wheat	cytosol	40.58	33.77
TraesCS3D01G111900.1	Wheat	cytosol	40.13	33.03
Os05t0184500-00	Rice	cytosol	24.89	31.36
Zm00001d010347_P001	Maize	nucleus, plastid	18.16	26.21
PGSC0003DMT400066745	Potato	endoplasmic reticulum, plasma membrane	18.39	19.34
PGSC0003DMT400078858	Potato	nucleus	18.83	18.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400000875	EnsemblPlantsGene:PGSC0003DMG400000332	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113	PFAM:PF13359
PGSC:PGSC0003DMG400000332	SEG:seg	UniParc:UPI000295CB65	UniProt:M0ZHH1	MapMan:35.1	:

Description

Salt responsive protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400000332]

Coordinates

chr12:-:3534329..3535937

Molecular Weight (calculated)

51227.5 Da

IEP (calculated)

7.399

GRAVY (calculated)

-0.451

Length

446 amino acids

Sequence
(BLAST)

001: MSKKIKINDF DHNPVEEILN KYLGVENETH PESKSDENHT LFDFKNQKVD FEMKDHVVVS GTKRVRENAN EKEEDVVEVG SGSGSGFSQQ PLQQRRLWVK
101: NRSNAWWEQC NRPDFPEEEF KKAFHMGKAT FDFICSELES VVTKKDTMLR MAIPVRQRVA VCIWRLATGE PLREVSRRFG LGISTCHKLV LEVCTAIRGV
201: LMAKFIQWPD EIKMEEIKHE FEILSGIQNV GGSMYTTHVP IIAPKESVAS YFNKRHTERN QKTSYSVTVQ GVVDPKGIFT DVCIGWPGSM TDDQVLEKSI
301: LYERANRGNL NGTYIVGSSG FPLTDWILVP FTHQNVTWTQ HAFNEKVNDV QKVAKEAFMR LKARWSCLKK RTEVKLQDLP VVLGACCTLH NICEMRGEEL
401: RQELRFDLVD DEMVPEIVVR SMNAMKVRDQ IAHKLLHHNH SGTSFL

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.