Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- extracellular 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G121900.1 | Wheat | cytosol, extracellular, plasma membrane | 97.91 | 97.91 |
| TraesCS1B01G141100.1 | Wheat | cytosol, extracellular, peroxisome | 85.56 | 86.29 |
| Os05t0184901-01 | Rice | cytosol, endoplasmic reticulum, peroxisome | 56.49 | 57.69 |
| Os05t0183900-00 | Rice | cytosol | 53.97 | 53.42 |
| Zm00001d010344_P001 | Maize | cytosol | 52.3 | 52.63 |
| Zm00001d010356_P001 | Maize | nucleus | 52.09 | 52.2 |
| GSMUA_Achr5P22180_001 | Banana | nucleus | 34.31 | 49.7 |
| Solyc08g062680.1.1 | Tomato | cytosol | 15.9 | 48.41 |
| GSMUA_Achr6P00850_001 | Banana | nucleus | 38.49 | 48.17 |
| GSMUA_Achr6P04860_001 | Banana | cytosol, nucleus, plastid | 33.68 | 47.49 |
| TraesCS1D01G449600.1 | Wheat | cytosol | 44.77 | 45.53 |
| PGSC0003DMT400000875 | Potato | cytosol | 41.42 | 44.39 |
| Solyc12g009000.1.1 | Tomato | cytosol | 43.51 | 42.98 |
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 44.77 | 42.04 |
| Os05t0184500-00 | Rice | cytosol | 30.75 | 41.53 |
| Solyc07g040960.1.1 | Tomato | cytosol | 42.89 | 41.08 |
| PGSC0003DMT400027828 | Potato | cytosol | 43.1 | 40.71 |
| TraesCS3D01G212000.1 | Wheat | cytosol, mitochondrion, nucleus | 44.77 | 40.23 |
| AT4G29780.1 | Thale cress | cytosol | 42.68 | 37.78 |
| TraesCS3D01G111700.2 | Wheat | cytosol | 41.63 | 37.13 |
| TraesCS3D01G111900.1 | Wheat | cytosol | 40.8 | 35.98 |
| TraesCS3D01G318900.1 | Wheat | cytosol | 31.8 | 34.47 |
| Zm00001d010347_P001 | Maize | nucleus, plastid | 21.76 | 33.66 |
| TraesCS3D01G350500.1 | Wheat | mitochondrion | 23.01 | 27.78 |
| TraesCS2D01G520200.1 | Wheat | mitochondrion | 20.5 | 22.32 |
| TraesCS7D01G124800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 17.36 | 21.67 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G122700.1 | EnsemblPlantsGene:TraesCS1D01G122700 | InterPro:HARBI1_dom | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF64 | PFAM:PF13359 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:123698930..123700366
Molecular Weight (calculated)
51318.6 Da
IEP (calculated)
6.619
GRAVY (calculated)
-0.189
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTYLTPFTP LPSLFDGPAA ADDHSSLLAF LMNDDLAAAP DVFPYYGGAE AAPAFFGHAA APLPPPAAAP PAEMTGQGRK RGFVPAGDDG SSRPPAVRRK
101: VQGSPPTSPA HSGGDAAPAA RSGGRRVWVR ERSTEWWDRL SGPACPDAEF RQAFRMSRAT FDALCDELSA AVAKEDTALR AAIPVHQRVA VCLWRLATGE
201: PLREVSRRFG LGISTCHNIV LQVCAALTAV LLPKAVRWPL ESPAARFQAL SGFPGVVGSV YTDHIPIGPP KDNVAEYYNR RLTERNNKAS YSVAVQAVVD
301: ADGAFTDVCI GLPGSLSDAA VLERSALHAR CETGMLGDDQ CRLVGGASYP LTDWMLVPYA HQNLTWAQHA FNERIAAARA AAQGAFQRLK GRWRCLQRRT
401: EPKLPDLHNM IGACCVLHNF CERSGEELDA DFQSELSQQD DADVVAAANP VLSAAADKER DRIAHDLLHG GHPSVTFL
101: VQGSPPTSPA HSGGDAAPAA RSGGRRVWVR ERSTEWWDRL SGPACPDAEF RQAFRMSRAT FDALCDELSA AVAKEDTALR AAIPVHQRVA VCLWRLATGE
201: PLREVSRRFG LGISTCHNIV LQVCAALTAV LLPKAVRWPL ESPAARFQAL SGFPGVVGSV YTDHIPIGPP KDNVAEYYNR RLTERNNKAS YSVAVQAVVD
301: ADGAFTDVCI GLPGSLSDAA VLERSALHAR CETGMLGDDQ CRLVGGASYP LTDWMLVPYA HQNLTWAQHA FNERIAAARA AAQGAFQRLK GRWRCLQRRT
401: EPKLPDLHNM IGACCVLHNF CERSGEELDA DFQSELSQQD DADVVAAANP VLSAAADKER DRIAHDLLHG GHPSVTFL
001: MEISSFPFPY LQDDECSHFL GLFQDMDSSP STFGLEGFNS NDNNTNQKKR PRKDDEGGGG GGGGTEVLGA VNGNNKAAFG DILATLLLLD EEAKQQQEQW
101: DFEFIKEKSL LEANHKKKVK TMDGYYNQMQ DHYSAAGETD GSRSKRARKT AVAAVVSAVA SGADTTGLAA PVPTADIASG SGSGPSHRRL WVKERTTDWW
201: DRVSRPDFPE DEFRREFRMS KSTFNLICEE LDTTVTKKNT MLRDAIPAPK RVGVCVWRLA TGAPLRHVSE RFGLGISTCH KLVIEVCRAI YDVLMPKYLL
301: WPSDSEINST KAKFESVHKI PNVVGSIYTT HIPIIAPKVH VAAYFNKRHT ERNQKTSYSI TVQGVVNADG IFTDVCIGNP GSLTDDQILE KSSLSRQRAA
401: RGMLRDSWIV GNSGFPLTDY LLVPYTRQNL TWTQHAFNES IGEIQGIATA AFERLKGRWA CLQKRTEVKL QDLPYVLGAC CVLHNICEMR KEEMLPELKF
501: EVFDDVAVPE NNIRSASAVN TRDHISHNLL HRGLAGTRTL
101: DFEFIKEKSL LEANHKKKVK TMDGYYNQMQ DHYSAAGETD GSRSKRARKT AVAAVVSAVA SGADTTGLAA PVPTADIASG SGSGPSHRRL WVKERTTDWW
201: DRVSRPDFPE DEFRREFRMS KSTFNLICEE LDTTVTKKNT MLRDAIPAPK RVGVCVWRLA TGAPLRHVSE RFGLGISTCH KLVIEVCRAI YDVLMPKYLL
301: WPSDSEINST KAKFESVHKI PNVVGSIYTT HIPIIAPKVH VAAYFNKRHT ERNQKTSYSI TVQGVVNADG IFTDVCIGNP GSLTDDQILE KSSLSRQRAA
401: RGMLRDSWIV GNSGFPLTDY LLVPYTRQNL TWTQHAFNES IGEIQGIATA AFERLKGRWA CLQKRTEVKL QDLPYVLGAC CVLHNICEMR KEEMLPELKF
501: EVFDDVAVPE NNIRSASAVN TRDHISHNLL HRGLAGTRTL
Arabidopsis Description
Nuclease [Source:UniProtKB/TrEMBL;Acc:Q84J48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.