Factsheet for GSMUA_Achr5P22180_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	69.7	67.85
GSMUA_Achr6P00850_001	Banana	nucleus	62.42	53.93
Solyc08g062680.1.1	Tomato	cytosol	22.73	47.77
Os05t0593000-01	Rice	cytosol, nucleus, plastid	54.55	42.55
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	54.24	39.69
GSMUA_Achr7P24010_001	Banana	nucleus	59.39	39.44
TraesCS1A01G441100.1	Wheat	cytosol	52.42	37.45
Zm00001d039524_P001	Maize	cytosol	52.73	36.86
Os01t0186900-02	Rice	cytosol	50.0	36.42
TraesCS1D01G449600.1	Wheat	cytosol	51.82	36.38
PGSC0003DMT400000875	Potato	cytosol	49.09	36.32
TraesCS1B01G475800.1	Wheat	cytosol, nucleus, plastid	51.82	36.31
VIT_11s0016g01810.t01	Wine grape	nucleus	53.33	34.58
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	49.7	34.31
TraesCS1A01G121900.1	Wheat	cytosol, extracellular, plasma membrane	49.39	34.1
Solyc07g040960.1.1	Tomato	cytosol	51.21	33.87
Os05t0184901-01	Rice	cytosol, endoplasmic reticulum, peroxisome	47.88	33.76
TraesCS1B01G141100.1	Wheat	cytosol, extracellular, peroxisome	48.48	33.76
TraesCS3D01G212000.1	Wheat	cytosol, mitochondrion, nucleus	54.24	33.65
TraesCS3B01G239400.1	Wheat	cytosol	53.94	33.58
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	54.24	33.58
Solyc12g009000.1.1	Tomato	cytosol	49.09	33.47
PGSC0003DMT400027828	Potato	cytosol	51.21	33.4
Os01t0582600-01	Rice	nucleus	55.15	33.03
Zm00001d044300_P001	Maize	cytosol	56.36	32.75
Os05t0183900-00	Rice	cytosol	45.76	31.26
Zm00001d010344_P001	Maize	cytosol	44.55	30.95
Zm00001d010356_P001	Maize	nucleus	43.94	30.4
TraesCS3D01G318900.1	Wheat	cytosol	39.09	29.25
AT4G29780.1	Thale cress	cytosol	47.58	29.07
TraesCS3A01G110000.1	Wheat	cytosol	41.52	26.5
TraesCS3B01G129100.1	Wheat	cytosol	42.42	26.42
TraesCS3D01G111700.2	Wheat	cytosol	41.21	25.37
TraesCS3D01G111900.1	Wheat	cytosol	40.91	24.91
Os05t0184500-00	Rice	cytosol	23.33	21.75
Zm00001d010347_P001	Maize	nucleus, plastid	18.79	20.06
GSMUA_Achr9P00980_001	Banana	endoplasmic reticulum, plasma membrane	18.18	14.35

Protein Annotations

EnsemblPlants:GSMUA_Achr5P22180_001	EnsemblPlants:GSMUA_Achr5T22180_001	EnsemblPlantsGene:GSMUA_Achr5G22180_001	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113
PFAM:PF13359	SEG:seg	UniParc:UPI000296AA21	UniProt:M0T0P3	MapMan:35.2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G22180_001]

Coordinates

chr5:-:24306728..24308482

Molecular Weight (calculated)

36888.7 Da

IEP (calculated)

7.307

GRAVY (calculated)

-0.357

Length

330 amino acids

Sequence
(BLAST)

001: MTTYQTPSLV PAASFDDDLF SYYYSFFHDP ATAVLPDPQP HSALPLAMES KVKKRPRADD LSPSRLVALK PFASSSPPHA DDDASGEEPQ AAPPPLQPGQ
101: RRLWVKDRSR DWWDRYNHPD LPEDEFRRAF RMSRATFDFL CEELGSAVAK EDTALRSAIP VRQRVAVCVW RLATGEPLRL VSRRFGLGIS TCHKLILEGI
201: SGIPNVVGVV DPDGVFTDVC IGWPGSMPDD QVLEKSALYQ RANSGFLNHQ WIVGGASYPL LDWVLVPYAQ KNLTWAQHSF NEKIGEVQRV AKEAFTKLKA
301: RWGCLQKRTE ARDSIAHNLL HHGLGGTAFL

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.