Factsheet for Zm00001d044300_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G239400.1	Wheat	cytosol	67.25	72.08
Os01t0582600-01	Rice	nucleus	69.72	71.87
TraesCS3D01G212000.1	Wheat	cytosol, mitochondrion, nucleus	67.08	71.62
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	66.9	71.29
Solyc08g062680.1.1	Tomato	cytosol	18.31	66.24
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	51.76	65.19
VIT_11s0016g01810.t01	Wine grape	nucleus	50.88	56.78
Zm00001d039524_P001	Maize	cytosol	47.01	56.57
GSMUA_Achr5P22180_001	Banana	nucleus	32.75	56.36
GSMUA_Achr6P00850_001	Banana	nucleus	36.97	54.97
PGSC0003DMT400000875	Potato	cytosol	43.13	54.93
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	32.75	54.87
PGSC0003DMT400027828	Potato	cytosol	46.3	51.98
Solyc07g040960.1.1	Tomato	cytosol	45.25	51.5
Solyc12g009000.1.1	Tomato	cytosol	43.13	50.62
AT4G29780.1	Thale cress	cytosol	44.54	46.85
Zm00001d010356_P001	Maize	nucleus	36.8	43.82
Zm00001d010344_P001	Maize	cytosol	36.62	43.79
Zm00001d010347_P001	Maize	nucleus, plastid	15.67	28.8
Zm00001d006850_P001	Maize	cytosol	9.33	25.6
Zm00001d005463_P001	Maize	cytosol	7.39	25.45
Zm00001d048620_P001	Maize	mitochondrion	16.37	23.85
Zm00001d026435_P001	Maize	plastid	17.78	22.9
Zm00001d018916_P001	Maize	cytosol	15.85	22.22
Zm00001d038377_P002	Maize	nucleus	17.43	22.15
Zm00001d045208_P001	Maize	endoplasmic reticulum, vacuole	13.56	20.16

Protein Annotations

EMBL:BT033663	EMBL:BT061084	EMBL:BT067177	EMBL:BT067651	EnsemblPlants:Zm00001d044300_P001	EnsemblPlants:Zm00001d044300_T001
EnsemblPlantsGene:Zm00001d044300	EntrezGene:100191551	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113	PFAM:PF13359
ProteinID:ONM40806.1	SEG:seg	UniParc:UPI00017B62B3	UniProt:B4F975	MapMan:35.1	:

Description

PIF / Ping-Pong family of plant transposases

Coordinates

chr3:+:224506619..224508325

Molecular Weight (calculated)

61123.1 Da

IEP (calculated)

7.306

GRAVY (calculated)

-0.322

Length

568 amino acids

Sequence
(BLAST)

001: MYMRPPTAND RPPSGGGGGA AAGAGAAAGD DDFAFYCSYL QDADAAAASA TSTLALAVDD PNPNPSAAGM TNGRRRKQRG AEDAGAAGEG EEEAKKDGKK
101: RSIAKLLTSL AALEAEEHAD RAGAADASRR ELALLESNAD TRSQATMDYY AKMESSFDAT AESEAAARSK RSRLAASAAT AAVVAGEEAA ASAAASPSAS
201: ASPTRAAGQG QGGHHQRRLW VKDRSRAWWD RCNSADYPEE EFRRAFRMGR GTFDMICDAL GSSVAKEDTM LRAAIPVRQR VAVCVWRLAT GEPLRLVSKR
301: FGLGISTCHK LVLEVCAAIK SVLMPRFLQW PDADAAARFK EGFERASGVP GVIGAMYTTH IPIIAPKISV AAYFNRRHTE RNQKTSYSIT LQGVVGPDGA
401: FTDVCIGWPG SMPDDQVLEK SMLHQRAAAG MMHDSWLVAG ASYPLMDWVL VPYTHPNLTW TQHAFNEKVA ELRRVAVEAF ARLKARWACL QKRTEVKLQD
501: LPVVLGACCV LHNICEIRGE EVDPAIRCEL VDDETTPENP VRSETASRAR DNIAHNLLHR GLGGNTFF

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.