Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3D01G212000.1 | Wheat | cytosol, mitochondrion, nucleus | 94.34 | 93.98 |
TraesCS3A01G209100.1 | Wheat | cytosol, nucleus, plastid | 88.87 | 88.37 |
Os01t0582600-01 | Rice | nucleus | 74.53 | 71.69 |
Zm00001d044300_P001 | Maize | cytosol | 72.08 | 67.25 |
Solyc08g062680.1.1 | Tomato | cytosol | 19.81 | 66.88 |
TraesCS1B01G475800.1 | Wheat | cytosol, nucleus, plastid | 54.15 | 60.93 |
VIT_11s0016g01810.t01 | Wine grape | nucleus | 53.96 | 56.19 |
PGSC0003DMT400000875 | Potato | cytosol | 47.17 | 56.05 |
GSMUA_Achr6P00850_001 | Banana | nucleus | 39.81 | 55.24 |
GSMUA_Achr6P04860_001 | Banana | cytosol, nucleus, plastid | 34.72 | 54.28 |
GSMUA_Achr5P22180_001 | Banana | nucleus | 33.58 | 53.94 |
PGSC0003DMT400027828 | Potato | cytosol | 50.57 | 52.96 |
Solyc07g040960.1.1 | Tomato | cytosol | 48.49 | 51.5 |
Solyc12g009000.1.1 | Tomato | cytosol | 46.6 | 51.03 |
AT4G29780.1 | Thale cress | cytosol | 48.11 | 47.22 |
TraesCS1B01G141100.1 | Wheat | cytosol, extracellular, peroxisome | 40.0 | 44.73 |
TraesCS3B01G129100.1 | Wheat | cytosol | 38.49 | 38.49 |
TraesCS3B01G389300.1 | Wheat | mitochondrion | 18.87 | 25.32 |
TraesCS2B01G258800.1 | Wheat | cytosol | 18.11 | 21.05 |
TraesCS2B01G547100.1 | Wheat | mitochondrion | 16.79 | 20.27 |
TraesCS7B01G026400.1 | Wheat | endoplasmic reticulum, plasma membrane | 14.53 | 19.74 |
Protein Annotations
EnsemblPlants:TraesCS3B01G239400.1 | EnsemblPlantsGene:TraesCS3B01G239400 | InterPro:HARBI1_dom | ncoils:Coil | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF113 |
PFAM:PF13359 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3B:+:377710607..377712199
Molecular Weight (calculated)
57903.5 Da
IEP (calculated)
6.452
GRAVY (calculated)
-0.282
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSPSGARPS SGGGAAADDD FAFYYSFFQD AAAASPLPLA LDGAAMPNNR RRKRGGDDDS AAEPIKDGSN NGRKRSIATI ITSLAALEAE DHADSAGAAD
101: ASRRELALLE SNADNKSQAM MDYFAKMEGS FDADADSEAA EARSGLSASA AAVAVVAAEE AATNTAASAS PPRAGHHQRR LWVKDRSQAW WDQCNSPDFP
201: EAEFRRAFRM GRETFDMICE ALGSAVAKED TMLRAAIPVR QRVAVCIWRL ATGEPLRLVS KRFGLGISTC HKLVLEVCGA IKSVLMPRFL QWPDEAAAGR
301: FKEGFERSFG VPGVIGAMYT THIPIIAPKI SVAAYFNRRH TERNQKTSYS ITLQGVVGPD RAFTDVCIGW PGSMPDDQVL EKSMLHQRAA AGMMHDACLV
401: GGASYPLMDW VLVPYTHQNL TWTQHAFNEK VGDIRNVAVE AFARLKTRWA CLQKRTEVKL QDLPVVLGAC CVLHNICEMR REELEPEVPF ALFDDDTTPE
501: TPVRSETAKQ ERDSIAHNLL HRGFAGTTFF
101: ASRRELALLE SNADNKSQAM MDYFAKMEGS FDADADSEAA EARSGLSASA AAVAVVAAEE AATNTAASAS PPRAGHHQRR LWVKDRSQAW WDQCNSPDFP
201: EAEFRRAFRM GRETFDMICE ALGSAVAKED TMLRAAIPVR QRVAVCIWRL ATGEPLRLVS KRFGLGISTC HKLVLEVCGA IKSVLMPRFL QWPDEAAAGR
301: FKEGFERSFG VPGVIGAMYT THIPIIAPKI SVAAYFNRRH TERNQKTSYS ITLQGVVGPD RAFTDVCIGW PGSMPDDQVL EKSMLHQRAA AGMMHDACLV
401: GGASYPLMDW VLVPYTHQNL TWTQHAFNEK VGDIRNVAVE AFARLKTRWA CLQKRTEVKL QDLPVVLGAC CVLHNICEMR REELEPEVPF ALFDDDTTPE
501: TPVRSETAKQ ERDSIAHNLL HRGFAGTTFF
001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
Arabidopsis Description
AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.