Factsheet for Solyc07g040960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027828	Potato	cytosol	82.57	81.42
Solyc08g062680.1.1	Tomato	cytosol	23.45	74.52
Solyc12g009000.1.1	Tomato	cytosol	59.72	61.57
VIT_11s0016g01810.t01	Wine grape	nucleus	57.92	56.78
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	51.1	56.54
Os05t0593000-01	Rice	cytosol, nucleus, plastid	47.29	55.79
GSMUA_Achr6P00850_001	Banana	nucleus	41.48	54.19
Os01t0186900-02	Rice	cytosol	46.89	51.66
GSMUA_Achr5P22180_001	Banana	nucleus	33.87	51.21
TraesCS1A01G441100.1	Wheat	cytosol	47.29	51.08
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	34.27	50.44
Zm00001d039524_P001	Maize	cytosol	47.7	50.42
TraesCS1D01G449600.1	Wheat	cytosol	47.09	50.0
TraesCS1B01G475800.1	Wheat	cytosol, nucleus, plastid	46.89	49.68
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	51.9	48.59
TraesCS3D01G212000.1	Wheat	cytosol, mitochondrion, nucleus	51.7	48.5
TraesCS3B01G239400.1	Wheat	cytosol	51.5	48.49
Os01t0582600-01	Rice	nucleus	53.11	48.09
GSMUA_Achr7P24010_001	Banana	nucleus	47.49	47.69
Zm00001d044300_P001	Maize	cytosol	51.5	45.25
AT4G29780.1	Thale cress	cytosol	48.1	44.44
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	41.08	42.89
TraesCS3D01G318900.1	Wheat	cytosol	37.88	42.86
TraesCS1B01G141100.1	Wheat	cytosol, extracellular, peroxisome	40.68	42.83
TraesCS1A01G121900.1	Wheat	cytosol, extracellular, plasma membrane	40.88	42.68
Zm00001d010344_P001	Maize	cytosol	37.88	39.79
Os05t0184901-01	Rice	cytosol, endoplasmic reticulum, peroxisome	37.07	39.53
Os05t0183900-00	Rice	cytosol	37.68	38.92
Zm00001d010356_P001	Maize	nucleus	36.87	38.57
TraesCS3A01G110000.1	Wheat	cytosol	36.67	35.4
TraesCS3B01G129100.1	Wheat	cytosol	37.27	35.09
TraesCS3D01G111700.2	Wheat	cytosol	35.27	32.84
TraesCS3D01G111900.1	Wheat	cytosol	35.27	32.47
Os05t0184500-00	Rice	cytosol	21.84	30.79
Solyc11g073090.1.1	Tomato	cytosol	17.23	26.14
Zm00001d010347_P001	Maize	nucleus, plastid	16.03	25.89
Solyc06g084150.2.1	Tomato	cytosol	17.43	23.71
Solyc05g054670.2.1	Tomato	cytosol	18.64	23.54
Solyc01g107920.2.1	Tomato	extracellular, plasma membrane	15.43	18.6
Solyc07g007360.1.1	Tomato	cytosol, mitochondrion, nucleus	15.63	17.49

Protein Annotations

EnsemblPlants:Solyc07g040960.1.1	EnsemblPlantsGene:Solyc07g040960.1	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113	PFAM:PF13359
SEG:seg	UniParc:UPI000276B7FE	UniProt:K4CDX3	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7:+:51226820..51228319

Molecular Weight (calculated)

57315.4 Da

IEP (calculated)

6.920

GRAVY (calculated)

-0.486

Length

499 amino acids

Sequence
(BLAST)

001: MEISSFLFPN QEDYPSPNFF SFFQDFDFPT TDTLAPIVAE PLPKKQRVDD FDFDLEQVVE QQGSLKSVED ILNKFLGFDK EEDKTNLKQF TNQNQSVFDF
101: SNQQPTGLIM INEKVKPMAS TNNKRSRQGS AEFISTSEEE SQPQQQRRLW VKDRSKAWWE QCNSPDFPEE EFKKAFRVSR ATFDMICEEL ESVVTKKDTM
201: LRQAIPVRQR VAVCIWRLAT GEPLREVSKR FGLGISTCHK LVLEVCTAIK GVLMPKFVQW PNEDYKMNEI KSEFQMLSGM PNVGGSIYTT HVPIIAPKVS
301: VAAYFNKRHT ERNQKTSYSV TVQGVVDPKG VFTDVCIGWP GSMSDDKVLE KSALYQRANR GQLKDTWVVG NSGYPLMDWV LAPYTRQNLT WTQHAFNEKV
401: GEVQKVAKEA FMRMKARWSC LRKRTEVKLQ DLPVVLGACC VLHNICEMRG EQLNPGLRFD LFDDEMVPEN IVRSMNAVQA RDQIAHQLLH QNHAGTNFL

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.