Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039524_P001 | Maize | cytosol | 64.9 | 62.29 |
| Solyc08g062680.1.1 | Tomato | cytosol | 19.43 | 56.05 |
| Os05t0593000-01 | Rice | cytosol, nucleus, plastid | 51.88 | 55.56 |
| GSMUA_Achr6P00850_001 | Banana | nucleus | 43.27 | 51.31 |
| GSMUA_Achr5P22180_001 | Banana | nucleus | 36.42 | 50.0 |
| PGSC0003DMT400000875 | Potato | cytosol | 49.01 | 49.78 |
| GSMUA_Achr6P04860_001 | Banana | cytosol, nucleus, plastid | 36.64 | 48.97 |
| Os05t0184901-01 | Rice | cytosol, endoplasmic reticulum, peroxisome | 49.23 | 47.65 |
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 52.76 | 46.95 |
| Solyc07g040960.1.1 | Tomato | cytosol | 51.66 | 46.89 |
| PGSC0003DMT400027828 | Potato | cytosol | 52.1 | 46.64 |
| Solyc12g009000.1.1 | Tomato | cytosol | 48.57 | 45.45 |
| Os01t0582600-01 | Rice | nucleus | 53.42 | 43.92 |
| Os05t0183900-00 | Rice | cytosol | 45.47 | 42.65 |
| AT4G29780.1 | Thale cress | cytosol | 48.34 | 40.56 |
| Os05t0184500-00 | Rice | cytosol | 25.83 | 33.05 |
| Os01t0838900-01 | Rice | cytosol, mitochondrion | 22.3 | 25.51 |
| Os11t0702700-01 | Rice | mitochondrion | 19.65 | 22.76 |
| Os07t0175100-01 | Rice | nucleus | 21.85 | 22.71 |
| Os06t0164500-00 | Rice | mitochondrion | 15.45 | 16.05 |
| Os04t0644200-00 | Rice | mitochondrion | 19.21 | 15.9 |
Protein Annotations
| EMBL:AK105323 | EnsemblPlants:Os01t0186900-02 | EnsemblPlantsGene:Os01g0186900 | EntrezGene:4325662 | InterPro:HARBI1_dom | PANTHER:PTHR22930 |
| PANTHER:PTHR22930:SF81 | PFAM:PF13359 | ProteinID:BAS70789.1 | RefSeq:XP_015621643.1 | SEG:seg | UniParc:UPI000188AEA1 |
| UniProt:B7EXU7 | MapMan:35.1 | : | : | : | : |
Description
Similar to cDNA clone:001-117-G12, full insert sequence. (Os01t0186900-01);Similar to transposon protein CACTA, En/Spm sub-class. (Os01t0186900-02);Similar to cDNA clone:001-117-G12, full insert sequence. (Os01t0186900-03)
Coordinates
chr1:+:4646434..4647956
Molecular Weight (calculated)
49037.2 Da
IEP (calculated)
6.027
GRAVY (calculated)
-0.113
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLTAAQFR SLFEMAGGED ISFLFGDDEA AAVAAPVELQ GKRGWEEVDQ GEGSGAVAAK RQRSPTSSRE NSSGSNEGGQ EEVSEAAAAM AAAVGRGGGR
101: RLWVKERDSE WWDMVSSPDY PDSEFRKAFR MSKATFEVVC DELAAAVAKE DTMLRAAIPV RKRVAVCVWR LATGEPLRLV SKRFGLGIST CHKLVLEVCA
201: ALKAMVMPKV VRWPEAGDAA AIAAHFEAIS GISGVVGAIY TTHIPIIAPK SNVASYYNRR HTERNQKTSY SMTVQCVVDS TGAFTDVCIG WPGSNSDEEV
301: LEKSALYLHR GVPGLIQGQW VVGGGSFPLM DWMLVPYTHQ NLTWAQHMLN EKVAAVRGVA RDAFERLKRR WGCLQKRTEV KLLDLPTVLG ACCVLHNICE
401: RSGDAVVDAD DCAFDLFDDD MVAENAVRSS AAAQARDAIA HNLLHSGGGA SFF
101: RLWVKERDSE WWDMVSSPDY PDSEFRKAFR MSKATFEVVC DELAAAVAKE DTMLRAAIPV RKRVAVCVWR LATGEPLRLV SKRFGLGIST CHKLVLEVCA
201: ALKAMVMPKV VRWPEAGDAA AIAAHFEAIS GISGVVGAIY TTHIPIIAPK SNVASYYNRR HTERNQKTSY SMTVQCVVDS TGAFTDVCIG WPGSNSDEEV
301: LEKSALYLHR GVPGLIQGQW VVGGGSFPLM DWMLVPYTHQ NLTWAQHMLN EKVAAVRGVA RDAFERLKRR WGCLQKRTEV KLLDLPTVLG ACCVLHNICE
401: RSGDAVVDAD DCAFDLFDDD MVAENAVRSS AAAQARDAIA HNLLHSGGGA SFF
001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
Arabidopsis Description
AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.