Factsheet for VIT_11s0016g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g01380.t01	Wine grape	nucleus	63.26	66.53
PGSC0003DMT400000875	Potato	cytosol	53.44	60.99
Os05t0593000-01	Rice	cytosol, nucleus, plastid	48.13	57.92
Solyc07g040960.1.1	Tomato	cytosol	56.78	57.92
PGSC0003DMT400027828	Potato	cytosol	56.39	56.72
GSMUA_Achr7P24010_001	Banana	nucleus	55.01	56.34
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	49.12	55.43
GSMUA_Achr6P00850_001	Banana	nucleus	41.45	55.24
Solyc12g009000.1.1	Tomato	cytosol	52.46	55.17
TraesCS1A01G441100.1	Wheat	cytosol	49.9	54.98
TraesCS3D01G212000.1	Wheat	cytosol, mitochondrion, nucleus	56.97	54.51
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	56.78	54.22
TraesCS3B01G239400.1	Wheat	cytosol	56.19	53.96
TraesCS1B01G475800.1	Wheat	cytosol, nucleus, plastid	49.51	53.5
Os01t0582600-01	Rice	nucleus	57.76	53.36
GSMUA_Achr5P22180_001	Banana	nucleus	34.58	53.33
TraesCS1D01G449600.1	Wheat	cytosol	48.92	52.98
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	35.17	52.8
Os01t0186900-02	Rice	cytosol	46.95	52.76
Zm00001d039524_P001	Maize	cytosol	48.33	52.12
AT4G29780.1	Thale cress	cytosol	54.81	51.67
Zm00001d044300_P001	Maize	cytosol	56.78	50.88
TraesCS1A01G121900.1	Wheat	cytosol, extracellular, plasma membrane	42.24	44.98
TraesCS1B01G141100.1	Wheat	cytosol, extracellular, peroxisome	41.85	44.94
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	42.04	44.77
TraesCS3D01G318900.1	Wheat	cytosol	36.54	42.18
Zm00001d010344_P001	Maize	cytosol	38.31	41.05
Os05t0184901-01	Rice	cytosol, endoplasmic reticulum, peroxisome	37.13	40.38
Zm00001d010356_P001	Maize	nucleus	37.72	40.25
Os05t0183900-00	Rice	cytosol	35.95	37.89
TraesCS3B01G129100.1	Wheat	cytosol	38.51	36.98
TraesCS3A01G110000.1	Wheat	cytosol	37.52	36.94
TraesCS3D01G111900.1	Wheat	cytosol	38.31	35.98
TraesCS3D01G111700.2	Wheat	cytosol	36.15	34.33
Os05t0184500-00	Rice	cytosol	20.83	29.94
Zm00001d010347_P001	Maize	nucleus, plastid	17.68	29.13
VIT_11s0118g00530.t01	Wine grape	cytosol	10.41	27.46
VIT_06s0004g04160.t01	Wine grape	nucleus	18.27	24.22
VIT_03s0063g00920.t01	Wine grape	plastid	20.43	23.16
VIT_07s0151g00360.t01	Wine grape	cytosol	18.66	22.2
VIT_13s0019g00460.t01	Wine grape	plastid	16.11	21.24
VIT_03s0063g00150.t01	Wine grape	extracellular, vacuole	17.49	19.6

Protein Annotations

ArrayExpress:VIT_11s0016g01810	EMBL:FN595756	EnsemblPlants:VIT_11s0016g01810.t01	EnsemblPlantsGene:VIT_11s0016g01810	EntrezGene:100247440	EntrezGene:LOC100247440
InterPro:HARBI1_dom	ncoils:Coil	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113	PFAM:PF13359	ProteinID:CCB51433
ProteinID:CCB51433.1	RefSeq:XP_002281001	RefSeq:XP_002281001.1	SEG:seg	unigene:Vvi.7065	UniParc:UPI0001984164
UniProt:F6HGQ1	wikigene:100247440	wikigene:LOC100247440	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr11:-:1460164..1461907

Molecular Weight (calculated)

57010.6 Da

IEP (calculated)

6.749

GRAVY (calculated)

-0.415

Length

509 amino acids

Sequence
(BLAST)

001: METTFLLDDF SHFYSFFQDS GNSIPDDSAG GGGSGGGGRK RRRGAGGGSG DESGALKEIL ASLLLLDEEE KLDQEKWALD NQNERALFEE NHRKRAQAMN
101: EYRADMVERF GEMEESESSR VKRARRSAST VAAGVAAAAA SSDNVGSESS SQPVGHHRRL WVKDRSKAWW EWCSHPDFPE EDFRRAFRMS RATFDMICDE
201: LDSVVTKKDT MLRLAIPVRQ RVAVCIWRLA TGEPLRLVSK RFGLGISTCH KLVLEVCAAI KTVLMPKFLQ WPDDEKSKIV KDEFESISGI PNVGGSMYTT
301: HIPIIAPKVS VAAYFNKRHT ERNQKTSYSV TVQGVVDPKG VFTDVSIGWP GSMSDEKVLE QSSLYQRANS GFLKDVWVVG GSGYPLLDWV MVPYTHQNLT
401: WTQHAFNEKI GDIQNVAKEA FARLKRRWSC LQKRTEVKLL DLPVVLGACC VLHNICQMRN EEMDPALQFE LFDDEMIPEN GLRSASSAQA RDRIAHDLLH
501: HGLAGNAFL

Best Arabidopsis Sequence Match ( AT5G12010.1 )
(BLAST)

001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL

Arabidopsis Description

AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.